protein-secondary-structure

There are 8 repositories under protein-secondary-structure topic.

  • peace195/multitask-learning-protein-prediction

    Multitask learning: protein secondary structure prediction, b-values prediction and solvent-accessibility prediction

    Language:Python24207

  • thuxugang/opus_fold

    OPUS-Fold: An Open-Source Protein Folding Framework Based on Torsion-Angle Sampling

    20303

  • thuxugang/opus_tass

    OPUS-TASS: A Protein Backbone Torsion Angles and Secondary Structure Predictor Based on Ensemble Neural Networks

    Language:Python11222

  • gkoulouras/seq-sec-ratio

    A console application for the estimation of the primary and secondary structure's elements. Input should be the FASTA-formatted "ss.txt" file generated by PDB database.

    Language:Visual Basic3100

  • katarinaelez/protein-ss-pred

    Protein secondary structure predictor

    Language:Jupyter Notebook3101

  • nickcafferry/PSSpred

    PSSpred (Protein Secondary Structure prediction) is a simple neural network training algorithm for accurate protein secondary structure prediction. It first collects multiple sequence alignments using PSI-BLAST. Amino-acid frequence and log-odds data with Henikoff weights are then used to train secondary structure, separately, based on the Rumelhart error backpropagation method. The final secondary structure prediction result is a combination of 7 neural network predictors from different profile data and parameters. The program is freely downloadable at the bottom of this page.

    Language:Perl2103

  • jtang10/MUFold-ss-pytorch

    MUFold-ss protein secondary structure prediction implementation in pytorch

    Language:Python1211

  • yasirbarlas/protein-secondary-structure-prediction

    Protein Secondary Structure Prediction (PSSP) using machine learning algorithms.

    Language:Jupyter Notebook0100