protein-stability

There are 14 repositories under protein-stability topic.

  • elaspic/elaspic2

    Predicting the effect of mutations on protein stability and protein binding affinity using pretrained neural networks and a ranking objective function.

    Language:Jupyter Notebook19326

  • chaconlab/korpm

    Predicting the effect of mutations on protein stability using a simple orientational potential.

    Language:C++15164

  • mtplr/pyMol-cookbook

    Some notes (cookbook) for pyMol. Protein Crystallography course.

    15103

  • sambitmishra0628/PSP-GNM

    Prediction of protein thermodynamic stability changes upon mutations through a Gaussian Network Model simulating protein unfolding behavior

    Language:Python10303

  • elaspic/elaspic

    Predicting the effect of mutations on protein stability and protein-protein interaction affinity.

    Language:Python9307

  • narodkebabci/gRoR

    A workflow to get rid of redundant mutations

    Language:R7100

  • dohlee/abyssal-pytorch

    Implementation of Abyssal, a deep neural network trained with a new "mega" dataset to predict the impact of an amino acid variant on protein stability.

    Language:Jupyter Notebook6212

  • dohlee/snakemake-cartesian-ddg

    Snakemake pipeline for Rosetta 'cartesian-ddg' protocol for protein stability prediction upon mutations.

    Language:Python6313

  • dohlee/rasp-pytorch

    Reimplementation of RaSP, a deep neural network for rapid protein stability prediction, in PyTorch.

    Language:Python4301

  • latticetower/stable-mutants

    https://biohackathon.biolib.com/event/2021-protein-edition/ - team "house-of-mutants" - task "Predicting multi-mutant protein stability"

    Language:Jupyter Notebook3302

  • dacarlin/bglb_thermal

    Large data set of thermal stabilities for mutants of BglB, and associated publication

    Language:Jupyter Notebook2100

  • n1ghtf4l1/mutating-doodle

    Identify the thermostable mutations in enzymes

    Language:Jupyter Notebook2200

  • bikman/fs-mutation-prediction

    Official repository for the paper "Few-shot Prediction of the experimental functional measurements for proteins with single point mutations".

    Language:Python1300

  • tancredi-end/Contact-potential-matrix-validation-for-DDG-prediction

    calculating ddg of point-mutation using contact potentials

    Language:Python