proteomics-data
There are 43 repositories under proteomics-data topic.
lgatto/MSnbase
Base Classes and Functions for Mass Spectrometry and Proteomics
lgatto/RforProteomics
Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
kevinkovalchik/RawTools
RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control analysis of Thermo Orbitrap raw mass spectrometer files from data-dependent acquisition experiments.
ursgal/ursgal
Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis
smith-chem-wisc/mzLib
Library for mass spectrometry projects
pwilmart/TMT_analysis_examples
Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.
lgatto/pRoloc
A unifying bioinformatics framework for organelle proteomics
pwilmart/IRS_normalization
An exploration of internal reference scaling (IRS) normalization in isobaric tagging proteomics experiments.
RTKlab-BYU/MSConnect
MSConnect is a Web-based integrated plateform to combine data storage/backup, process and visualization of MS-based Proteomics data.
br3ndonland/R-proteomics-Nrf1
Molecular biology experiments, mass spectrometry-based proteomics, and reproducible data analysis in R
chhh/deltamass
DeltaMass: view and interrogate open proteomics search data
cox-labs/CoxLab_Bug_Reporting
MaxQuant and Perseus Bug Reporting
dev-ev/isobaric-prot-wf-r
Simple workflows for the isobaric-labeling proteomic data from Proteome Discoverer with ANOVA, t-testing, DEqMS/limma and annotation via fgsea
proteomicsyates/ProteinClusterQuant
Protein Cluster Quant is a Java software for the analysis of complex proteomics samples (quantitative or not). It helps to reduce the redundancy of the peptide-to-protein relationship and to visualize the results in a bipartite network (Cytoscape).
Cajun-data/nanoSPLITS
Github repository for nanoSPLITS manuscript data and R scripts
smdb21/PACOM
PACOM (Proteomics Assay COMparator) is a Java stand alone tool for visualize and compare large proteomics datasets
julianstanley/ProteinFeatures
Feature extraction from .pdb files
HUPO-PSI/proxi-schemas
ProXI: Schema definitions for the Proteomics eXpression Interface
RTKlab-BYU/Raw_File_Uploader
Tool to automatically upload result file to Proteomics Data Manager (mainly for MS based proteomics)
AnnaMariaLedwon/Prediction-of-molecular-subtypes-of-Breast-Cancer
Prediction of molecular subtypes of Breast Cancer based on TCGA proteomic data
proteomicsunitcrg/rawocop
Smart, light, easy and robust Thermo RAW files backup program
a-r-j/TB-Resources
List of online databases and resources for Mycobacterium Tuberculosis
Keniajin/protGear
protGear is a package for protein microarray data processing just before the main analysis.
kjetil-hansen/LUT-Calculator
A python-based program to optimise mass spectrometer collision energies for peptides in HDX-MS experiments
pegerto/ASDParser
ASDParser
sivkri/Perseus-MS-Proteomics-Venn
Mass spectrometry Perseus Data analysis
borfebor/alpaca_proteomics
Python pipeline for Absolute Protein Quantification data analysis
davwong47/Circadian-proteomics
Custom analysis of in vitro circadian proteomics and phosphoproteomics using multiple sets of 10plex TMT with two genotypes
dmpio/Davidson_et_al_2020_Kac_PRX
Repository for proteomic data analysis used in the publication "Extreme Acetylation of the Cardiac Mitochondrial Proteome Does Not Promote Heart Failure."
dmpio/Williams_et_al_2019_Kac_PRX
Repository for proteomic data analysis used in the publication "Disruption of acetyl-lysine turnover in muscle mitochondria promotes insulin resistance and redox stress without overt respiratory dysfunction."
jajohnso29/jajohnso29
My professional repository of project and publication data files in computational biology and data science.
MRCToxBioinformatics/Proteomics.analysis.data
Data for proteomics data analysis course
PhilipBerg/pair
Proteomics analysis in R
proteomicsyates/CensusTMT2MSstatsTMT
Converter from Census TMT output file to the input of MSstatsTMT
dev-ev/qc-script-PD24
QC scripts for LC-MS proteomic equipment based on Proteome Discoverer 2.4 output
m-jahn/shiny-genome-stats
R Shiny App to show basic features of microbial genomes