pymol-plugin
There are 39 repositories under pymol-plugin topic.
MengwuXiao/GetBox-PyMOL-Plugin
A PyMOL Plugin for calculating docking box for LeDock, AutoDock and AutoDock Vina.
cbalbin-bio/pymol-color-alphafold
PyMOL extension to color AlphaFold structures by confidence (pLDDT).
pymodproject/pymod
PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.
MooersLab/pymolshortcuts
The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websearches from within PyMOL as well as many other convienent functions that make work in PyMOL more productive..
paiardin/DockingPie
A Consensus Docking Plugin for PyMOL
smutao/PyVibMS
A PyMOL plugin for visualizing vibrations in molecules and solids
patonlab/wSterimol
Generate Boltzmann-weighted Sterimol Steric Parameters for Conformationally-Flexible Substituents
smutao/LModeA-nano
calculate chemical bond strength in solids, surfaces and molecules
rasbt/BondPack
A collection of PyMOL plugins to visualize atomic bonds.
rinikerlab/restraintmaker
Restraintmaker is a tool intended to build Position or Distance restraints for Molecular Dynamics simulations (or any other simulation technique with coordinate-based particles). It can be used on a script layer or as an interactive plugin for PyMol. Features are different selection modes and Optimizers to distribute restraints.
LBC-LNBio/parKVFinder
parKVFinder: thread-level parallel KVFinder
LBC-LNBio/parKVFinder-win
parKVFinder-win: thread-level parallel KVFinder for Windows
unizar-flav/PyViewDock
Docking viewer plug-in for PyMOL
exTerEX/pymol-ramachandran
A simple script to generate Ramachandran plot from Pymol.
HaolingZHANG/pymolBE
Customized batch exhibition of three-dimensional molecules based on pymol framework
ArturKlauser/pymol-pdb-plugin
PDB plugin for PyMOL
atfrank/PyShifts
Pyshifts: A Pymol Plugin for Chemical Shift-Based Analysis of Biomolecular Ensembles
filipsPL/fingernat-pymol-plugin
PyMOL plugin to visualize interactions detected by the fingeRNAt program
RUBi-ZA/pyMODE-TASK
MODE-TASK plugin for PyMOL
cbalbin-bio/pymol-map-pocket
PyMOL extension to map a protein pocket, generated from PockDrug, to the full protein structure.
GoetzParsiegla/Smina-plugin
This is a plugin for PyMol 2.x to use the vina/Autodock fork SMINA under Windows 10 or 11 with the wsl2 linux subsystem installed.
NRGlab/NRGsuite
NRGsuite is a PyMOL plugin (GUI) for FlexAID
HNUBioinformatics/InPrNa
A tool for insight into protein-nucleic acids interaction information
abdullateefv/PyMolCopilot
An AI Assistant for the PyMOL molecular visualization software
GoetzParsiegla/Dipolemoment-plugin
This is a plugin for PyMol 2.x to calculate and show the dipole moment vector of a proteine structure in pdb format.
JMB-Scripts/dssp-to-pymol
Assess the secondary structure in Pymol
LBC-LNBio/PyMOL-KVFinder-web-Tools
PyMOL KVFinder-web Tools: a PyMOL v2 plugin for interacting with KVFinder-web service
miroslavkurka/wkplugin
A PyMol plugin for calculating Wu-Kabat Variability and displaying it on the pdb model
scatter3d/noodle-strut
noodle-strut is an interactive 3D printing structural support module for PyMOL
smutao/Three-Arm-Turnstile-Assistant
PyMOL plugin to modify molecular structure via turnstile rotation
tongalumina/rmsdca
PyMOL script to calculate backbone RMSD of two polypeptides of same origin
tsj5/APBS_Qt_plugin
Demo/experimental port of APBS plugin to PyQt for PyMOL 2.x.
xing1wan/list_unaligned_resi
A PyMOL script to calculate alpha carbon distances between two aligned protein structures
AngelRuizMoreno/chem_tools
This repository contains rantom but useful scripts for all purposes analysis.
zmactep/pymol-designer
Protein design tools as PyMOL plugin