pymol

There are 102 repositories under pymol topic.

  • PyMOL-toolbox

    Language:Python1

  • JED

    JED is a program for performing Essential Dynamics of protein trajectories written in Java. JED is a powerful tool for examining the dynamics of proteins from trajectories derived from MD or Geometric simulations. Currently, there are two types of PCA: distance-pair and Cartesian, and three models: COV, CORR, and PCORR.

    Language:HTML5

  • MooersLab

    Landing page for MooersLab repository

    4

  • Smina-plugin

    This is a plugin for PyMol 2.x to use the vina/Autodock fork SMINA under Windows 10 or 11 with the wsl2 linux subsystem installed.

    Language:Python4

  • coronavirus-begone

    A Colab notebook explaining the pipeline for smile format, openbabel, autodock vina, pymol and more

    Language:Jupyter Notebook4

  • pymol-pdb-plugin

    PDB plugin for PyMOL

    Language:Python4
  • PyMOL4Spliceosome

    PyMOL4Spliceosome

    Structures of the spliceosome processed to be easily viewed with PyMOL

    4

  • pyMODE-TASK

    MODE-TASK plugin for PyMOL

    Language:C++4

  • PyShifts

    Pyshifts: A Pymol Plugin for Chemical Shift-Based Analysis of Biomolecular Ensembles

    Language:Python4

  • pymol-map-pocket

    PyMOL extension to map a protein pocket, generated from PockDrug, to the full protein structure.

    Language:Python3

  • PyMOLwallhangings

    Protocol for making large scale images to be framed or for background images of posters.

    Language:HTML3

  • Biomolecular-simulation

    Compilations of hands-on project Biomolecular simulations

    Language:Python3

  • GShare

    Collaboration and sharing will make our research better!

    Language:Python3

  • moulinette

    Bioinformatics (biochemistry) data processing scripts for NMR, and protein data analysis (PyMOL)

    Language:Python3

  • Autodock-Vina

    Simple pipeline to execute molecular docking experiments

    Language:Jupyter Notebook2

  • SerenaRosi

    SerenaRosi's GitHub page

    2

  • bioinfo

    Guia de programas e ferramentas de bioinformática e química computacional

    2

  • colabOpenSourcePyMOLpySnips

    Code snippets for colab-notebooks running open-source PyMOL

    Language:Jupyter Notebook2

  • ProteinViewer

    A protein visualization system based on Unreal Engine 4.

    Language:C++2

  • pymolrc

    Blaine's pymolrc file, the configuration file for the molecular graphics program.

    2

  • pseutils

    Make pymol session files vieweable on the web

    Language:Rust1

  • AR-Structural-Biology

    Augmented Reality object for biochemistry

    Language:HTML1

  • pymol-powerpack

    A powerup for your PyMOL

    Language:Python1

  • dssp-to-pymol

    Assess the secondary structure in Pymol

    Language:Python1

  • Stride-to-Pymol

    To assess the secondary structure of your protein with STRIDE in Pymol

    Language:Python1

  • ACA2022

    Slideshow to talk in August 2022 at 72nd Annual Meeting of the American Crystallographic Association

    1

  • APBS_Qt_plugin

    Demo/experimental port of APBS plugin to PyQt for PyMOL 2.x.

    Language:Python1

  • webdock

    Open-Sourced. Easy docking in your browser without any login requirement. Post processing and interaction diagram included.

    Language:Jupyter Notebook1

  • Dipolemoment-plugin

    This is a plugin for PyMol 2.x to calculate and show the dipole moment vector of a proteine structure in pdb format.

    Language:Python1
  • Three-Arm-Turnstile-Assistant

    Three-Arm-Turnstile-Assistant

    PyMOL plugin to modify molecular structure via turnstile rotation

    Language:Python1
  • BioInfoProteins

    BioInfoProteins

    [Bioinformatics] Identification de motifs structuraux dans les protéines

    Language:Python1

  • taggedpymolpysnips

    PyMOL Python Script Writing with Code Templates in Jupyter notebooks with JupyterLab using the Elyra extension

    Language:Jupyter Notebook1

  • Automatic_Protein_Classification

    Automatic Protein Classification using gaussian integrals.

    Language:Jupyter Notebook1

  • noodle-strut

    noodle-strut is an interactive 3D printing structural support module for PyMOL

    Language:Python1

  • rstudiopymolpysnips

    PyMOL snippet library is written in Python for use in RStudio via the R reticulate package and the PyMOL Python API.

    Language:Vim Snippet1

  • Tripeptide-single-amino-acid-database-generator

    A script to generate a tripeptide database. At present, the amino acids of tripeptides produced are not complete

    Language:Python1