qupath

There are 20 repositories under qupath topic.

  • Bayer-Group/paquo

    PAthological QUpath Obsession - QuPath and Python conversations

    Language:Python106109616

  • andreped/NoCodeSeg

    🔬 Code-free deep segmentation for computational pathology

    Language:Jupyter Notebook5251016

  • arjvik/QuPath-Scripting-Tools

    Toolkit to help develop and run QuPath scripts from Eclipse and other IDEs, including over remote connections. (See README.md for more information)

    Language:Groovy16101

  • BiologyTools/BioGTK

    A cross platform version of Bio library & program. Bio is a library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, pyramidal & series.

    Language:C#8212

  • mattaq31/GelGenie

    Open-Source package for segmentation and analysis of gel electrophoresis images using machine learning. Both a python framework for training/running models and a QuPath GUI extension are available.

    Language:Python8400
  • qupath-extension-openvino

    dkurt/qupath-extension-openvino

    Intel OpenVINO extension for QuPath, a digital pathology platform

    Language:Java5130

  • Naveiras-Lab/MarrowQuant

    MarrowQuant is a user-friendly algorithm for the quantification of H&E bone marrow tissue biopsies in whole slide images, implemented as a series of QuPath Scripts. Keywords: Digital Pathology, Whole slide Imaging, QuPath, Bone Marrow, Adiposity

    Language:Groovy5241

  • openmicroanatomy/qupath-edu-extension

    Language:Java5002

  • elijahedmondson/QuPath-scripts

    A collection of groovy scripts for digital pathology

    Language:Groovy4101

  • HMS-IAC/qupath-workshop

    Materials supporting the QuPath workshop at Harvard Medical School.

    3001

  • ome/ecdp2019-publication

    Supplementary information associated with Besson et al. (2019) ECDP 2019

    Language:Python2403

  • SPerrott22/Deepcell-to-QuPath

    pipeline that converts Deepcell generated instance segmentation masks of nuclei from an ome-tiff to Cell Objects with auto-generated cytoplasms in QuPath

    Language:Jupyter Notebook211

  • BiologyTools/BioLib

    A GUI-less version of Bio .NET library for editing & annotating various microscopy image formats. Supports all bioformats supported images. Integrates with ImageJ, running ImageJ filters & macro functions.

    Language:C#1101

  • ibrahimberb/QuGeoCOCO

    Converting GeoJSON annotations from QuPath to COCO style.

    Language:Python1201

  • ChristelleSanchez/Bone_volume_SFG

    Script for semi-automated bone volume quantification on Fast green Slides

    Language:Groovy0100

  • ChristelleSanchez/Cartilage_Toluidineblue

    Cartilage analysis for Toluidine blue slides

    Language:Groovy0100

  • flalom/drugsens

    DRUGSENS is a R-package that allows users to automatically analyze QuPath™ output data from imaging analysis

    Language:R0100

  • HMS-IAC/stroma-spatial-analysis

    An image analysis pipeline for quantifying the spatial distribution of cell markers in stroma-rich tumors

    Language:Jupyter Notebook0100

  • MohamedOmar2020/QuPath_scripts

    Custom groovy scripts for QuaPath

    Language:Groovy10

  • whyclos/nuclei-segmentation-neural-nw

    nuclei segmentation by treshold, watershed methods & stardist neural network (educational project)

    10