raxml
There are 9 repositories under raxml topic.
wrf/pdbcolor
Python code to color a PDB structure based on parameters from a multiple sequence alignment
btmartin721/raxml_ascbias
Script for removing or counting invariant sites for the RAxML ascertainment bias corrections
denisbeslic/BacterialGenomeAnalysis
Automated pipeline for whole bacterial genome analysis based on snakemake
tahiri-lab/aPhyloGeo-pipeline
Phylogeographic workflow using sliding-windows, RAxML-NG and FastTree
justincbagley/MAGNET
Shell script pipeline for inferring ML gene trees for many loci (e.g. genomic RAD loci)
vjlab/resources
Commonly used phylogenetic methods, Monash HPC access and basic bioinformatics
cbcrg/raxml-nf
RAxML pipeline
achimklittich/WindowTrees
Program to generate RAxML sliding window trees
laduplessis/Treponema_pallidum_in_early_modern_Europe
Data and scripts to reproduce the molecular clock dating analyses presented in "Ancient bacterial genomes reveal a formerly unknown diversity of Treponema pallidum strains in early modern Europe (Majander et al.)