reference-free
There are 12 repositories under reference-free topic.
ZJUFanLab/scDeepSort
Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network
aljpetri/isONform
De novo construction of isoforms from long-read data
aljpetri/isONclust3
De novo clustering of long transcript reads into genes
ZJUFanLab/scDeepSort_performance_comparison
The source code and results for different methods on annotating external testing datsets of human and mouse.
edgardomortiz/sam2consensus
Get the consensus sequences from SAM (and BAM) files, ignoring the reference
gi-bielefeld/sans
Alignment-free phylogenomic splits
jfjlaros/HUMID
HUMID: reference free FastQ deduplication
metagenopolis/ESKRIM
ESKRIM is a reference-free tool that compares microbial richness in shotgun metagenomic samples by counting k-mers
tobiasrausch/rdxon
Reference-free FASTQ filter for rare germline and somatic variants
namini94/MUSTANG
MUSTANG: reference-free MUlti-sample Spatial Transcriptomics data ANalysis with cross-sample transcriptional similarity Guidance
paujedynak/reffree_cell_mix_tutorial
Example of an estimation of cell-type proportions using reference-free method (RefFreeEWAS)
ayoraind/SKA_phylogeny
A Nextflow pipeline to generate a phylogenetic tree from SKA alignment