repeats
There are 25 repositories under repeats topic.
genometools/genometools
GenomeTools genome analysis system.
tolkit/telomeric-identifier
Identify and find telomeres, or telomeric repeats in a genome.
lmdu/krait
An ultrafast tool for genome-wide survey of microsatellites and primer design
smangul1/rop
The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating from repeat sequences, recombinant B and T cell receptors, and microbial communities.
RKMlab/perf
PERF is an Exhaustive Repeat Finder
lewhunt/react-video-looper
A video player component for looping inner sections of video. Packaged as an npm library and cdn script.
nf-cmgg/structural
A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads
LankyCyril/edgecase
A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, and for haplotype inference.
lmdu/pytrf
a python package for finding tandem repeats from genomic sequences
vgl-hub/teloscope
A comprehensive telomere annotation tool for genome assemblies and graphs.
ayaanhossain/nrpcalc
Non-Repetitive Parts Calculator - Automated design and discovery of non-repetitive genetic parts for engineering stable genetic systems
stajichlab/REPET-slurm
SLURM-ready bash scripts to run the complete REPET pipeline
dancooke/tandem
A C++ tandem repeat finding library
preethamvishy/try
A command line tool to try executing a shell command and retry if it fails. Optionally repeat with time intervals even if it succeeds. 🔁 https://www.npmjs.com/package/try-cli
sirusb/2CLike_analysis
Some of the mapping and normalization scripts used in our NCB paper PMID:31209294
RevantOrg/Revant
De novo repeat inference from long reads
caspargross/expander
Identify and characterize repeat expansions in long read data
jnarayan81/huntPalindrome
Find palindrome/inverted repeats in contigs/scaffolds
rmhubley/coseg
Transposable Element Subfamily Detection
BioinformaticsToolsmith/MsDetector
This is a tool for finding micro satellites in a chromosome.
dgavr/Zebrafish_mappability
Different approaches to calculate mappability and GC-rich tracks for danio rerio genomes
fcunial/Revant
De novo repeat inference from long reads
jnarayan81/Palindromer
Explore palindromes
kelsonbatista/project-pyhton-job-insights
Project Job Insights (Python)
oist/LuscombeU_stlrepeatmask
Mask genomic repeats and low-complexity regions for the Scrambling in the Tree of Life project