reproducible-paper
There are 126 repositories under reproducible-paper topic.
benmarwick/rrtools
rrtools: Tools for Writing Reproducible Research in R
crsh/papaja
papaja (Preparing APA Journal Articles) is an R package that provides document formats to produce complete APA manuscripts from RMarkdown-files (PDF and Word documents) and helper functions that facilitate reporting statistics, tables, and plots.
klemenjak/nilm-papers-with-code
An archive for NILM papers with source code and other supplemental material
alan-turing-institute/TCPDBench
The Turing Change Point Detection Benchmark: An Extensive Benchmark Evaluation of Change Point Detection Algorithms on real-world data
cambridge-mlg/DUN
Code for "Depth Uncertainty in Neural Networks" (https://arxiv.org/abs/2006.08437)
cduvallet/microbiomeHD
Cross-disease comparison of case-control gut microbiome studies
nuest/ten-simple-rules-dockerfiles
Ten Simple Rules for Writing Dockerfiles for Reproducible Data Science
jperkel/computed_manuscript
A model executable manuscript
digantamisra98/Reproducibilty-Challenge-ECANET
Unofficial Implementation of ECANets (CVPR 2020) for the Reproducibility Challenge 2020.
alan-turing-institute/CSV_Wrangling
Repository for reproducibility of the CSV file project
SchlossLab/Topcuoglu_ML_mBio_2020
Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data
crsh/reproducible-research-practices-workshop
Workshop on reproducible research practices for psychologists
nevrome/rrtools.addin
R Package - A graphical user interface for some of the main functions of Ben Marwick's rrtools package
benmarwick/1989-excavation-report-Madjedbebe
Text, data and code to accompany the analysis of the 1989 excavation data
SchlossLab/Baxter_glne007Modeling_GenomeMed_2015
Microbiota-based model improves the sensitivity for detecting colonic lesions
carpentries-incubator/reproducible-publications-quarto
Introduction to Reproducible Publications with Quarto
miriamspsantos/open-source-imbalance-overlap
A collection of Open Source Contributions in Learning from Imbalanced and Overlapped Data
everhartlab/sclerotinia-366
Analysis for "Population structure and phenotypic variation of *Sclerotinia sclerotiorum* from dry bean (*Phaseolus vulgaris*) in the United States"
econ-ark/nbreproduce
Reproduce Jupyter Notebooks inside Docker Containers.
SchlossLab/Hannigan_CRCVirome_mBio_2018
Investigating the gut virus communities associated with colon cancer.
cambridge-mlg/arch_uncert
Code for "Variational Depth Search in ResNets" (https://arxiv.org/abs/2002.02797)
computorg/template-computo-quarto
Template for submitting a manuscript with quarto (Jupyter or Rmarkdown)
SchlossLab/Kozich_MiSeqSOP_AEM_2013
Reproducible analysis of sequence analysis on a MiSeq
AaronGullickson/markdown_course_materials
Course Materials for Code Horizons Course on Creating Reproducible Reports with Quarto and R Markdown
acfrery/Grading-Reproducibility-in-Remote-Sensing-Articles
Position Paper for the J-STARS Special Issue on Reproducible Research in Remote Sensing
SchlossLab/Schloss_PacBio16S_PeerJ_2016
Repo for Sequencing 16S rRNA gene fragments using the PacBio SMRT DNA sequencing system
carpentries-incubator/quarto-project-example
Project Example for the Lesson: Introduction to Reproducible Publications with Quarto
SchlossLab/Schloss_PacBio16S_PeerJ_2015
Repository to accompany "Sequencing 16S rRNA gene fragments using the PacBio SMRT DNA sequencing system"
alan-turing-institute/memorization
Code for "On Memorization in Probabilistic Deep Generative Models"
ctuning/ck-scc
The procedures and a workflow to prepare Student Cluster Competition submissions:
fungenomics/HGG-oncohistones
Analysis for "K27M in canonical and noncanonical H3 variants occurs in distinct oligodendroglial cell lineages in brain midline gliomas" (Jessa et al, Nature Genetics, 2022)
ReneHeim/proj_on_uav
This repository contains the code to reproduce the article (https://doi.org/10.1007/s11119-024-10133-0). The presented method allows to extract oblique and nadir viewing angles from UAV-mounted, multispectral snapshot cameras.
yufree/pmdda
reproducible repo for PMDDA paper