reproducible-workflows
There are 30 repositories under reproducible-workflows topic.
gpoore/codebraid
Live code in Pandoc Markdown
leipzig/awesome-reproducible-research
A curated list of reproducible research case studies, projects, tutorials, and media
reanahub/reana
REANA: Reusable research data analysis platform
centre-for-humanities-computing/DaCy
DaCy: The State of the Art Danish NLP pipeline using SpaCy
ctuning/ctuning-programs
Collective Knowledge extension with unified and customizable benchmarks (with extensible JSON meta information) to be easily integrated with customizable and portable Collective Knowledge workflows. You can easily compile and run these benchmarks using different compilers, environments, hardware and OS (Linux, MacOS, Windows, Android). More info:
a-paxton/living-documents
How to use Jupyter notebooks and R markdown to create living documents and reproducible reports.
calekochenour/remote-sensing-textbook
Textbook that provides JavaScript and Python code to create open reproducible remote sensing analyses and workflows in Google Earth Engine.
ziap/dotfiles
My SwayWM dotfiles
OpenScienceMOOC/Module-3-Reproducible-Research-and-Data-Analysis
Module 3: Reproducible Research and Data Analysis
enoches/Qualis_2019_preliminar
Revistas de Economia com a nova classificação Qualis 2019: lista extraída a partir daquele PDF de quatrocentas páginas!
gederajeg/happyr
The accompanying R package for Rajeg's (2019) PhD thesis titled "Metaphorical profiles and near-synonyms: A corpus-based study of Indonesian words for Happiness"
guilgautier/reproducible-phd
Get your Ph.D. reproducible with Python and Github
gustaveroussy/rna-count-kallisto
Estimate fastq-formatted read abundace in RNA-Seq analysis with Kallisto
gisma-courses/LV-uav-workflow
The Micro Remote Sensing course - provides a complete introduction to reproducible flight planning, acquisition, pre-processing, and exemplar analysis of high resolution low budget image data using commercial and open software systems.
holmesjoli/archiveR
An R package for data archiving and linking with code
ivotron/mlperf-workflows
Popperized MLPerf benchmark workflows
adaish/reprod
my R environment
holmesjoli/utilsR
R utility functions
tdayris-perso/bam-msisensor
Detect replication slippage variants at microsatellite regions
tdayris-perso/rna-count-salmon
Snakemake workflow for Salmon quantification and FastQC quality controls
w-guo/Rental-price-prediction-pipeline
Build a re-usable end-to-end pipeline for predicting short-term rental prices in NYC
holmesjoli/archivePy
A Python package for data archiving and linking with code
smarthome-go/server-integration-docker
A docker image for running the server's integration tests in a reproducible manner
tdayris/fair_gatk_mutect2
Snakemake workflow used to call germline and/or somatic variants with GATK Mutect2
calekochenour/machine-learning-tutorial
Tutorial for working with machine learning algorithms in Python.
gustaveroussy/rna-count-salmon
Count your fastq-formatted rna-seq reads with Salmon
holmesjoli/ProgrammerKnowledgeBase
A bookdown project of best programmer practices for intermediate R and Python programmers
holmesjoli/utilsPy
Python utility functions
jmackie/pedantic-nix-shell
A template for projects using Nix to provision tools and enforce coding standards
mxagar/udacity-cd0581-building-a-reproducible-model-workflow-exercises
Exercise Staters and solutions for cd0581-building-a-reproducible-model-workflow by Giacomo Vianello