rna-folding
There are 27 repositories under rna-folding topic.
Lattice-Automation/seqfold
nucleic acid folding
srnas/barnaba
Analyse Nucleic Acids Structure and Simulations with baRNAba
Koeng101/dnadesign
A Go package for designing DNA.
marcom/ViennaRNA.jl
Julia interface to ViennaRNA for RNA structure prediction and analysis
marcom/RNAstructure.jl
Julia interface to the RNAstructure program suite for RNA structure prediction and analysis
cgoliver/Nussinov
Python implementation of Nussinov RNA folding algorithm and recursive backtrack.
marcom/LinearFold.jl
Julia interface to LinearFold RNA structure prediction programs: LinearFold, LinearPartition, LinearSampling, and LinearTurboFold
lemerleau/RAFFT
RAFFT: RNA structure and folding dynamics predictions using the fast Fourier transform
marcom/FoldRNA.jl
Nucleic acid secondary structure prediction and analysis
GeoRouv/RNA-folding
š§¬ Zuker: An RNA secondary structure prediction algorithm
Hori-Lab/SIS
Coarse-grained molecular dynamics simulation with the Single-Interaction-Site RNA model
HosnaJabbari/Iterative-HFold
RNA Pseudoknotted Secondary Structure Prediction Using Relaxed Hierarchical Folding
nlabrad/CIMS-Cyanobacterial-ITS-motif-slicer
A tool to identify and extract the commonly used ITS folding motifs from a 16s-23s rRNA sequence.
andriusbern/RNAgent
RNA design tool that utilizes reinforcement learning
ChristinaAndrinopoyloy/Algorithms_in_Structural_Biology
2 homeworks for "Algorithms in Structural Biology" Master course of Data Science and Information Technologies (DSIT)
HosnaJabbari/CCJ
MFE method for predicting the psuedoknotted secondary structures of RNA sequences.
HosnaJabbari/DinoKnot
RNA/DNA/PMO Pseudoknotted Secondary Structure Interaction Prediction Using Relaxed Hierarchical Folding
YannDubs/FourRussiansRNA
Faster algorithms for RNA-folding using the Four-Russians method
ChevronOne/Tools-For-Computational-Biology
Tools For Computational Biology
HosnaJabbari/HFold
RNA Pseudoknotted Secondary Structure Prediction Using Strict Hierarchical Folding
LedaKatopodi/rna-folding
RNA folding; implementation of the Zuker algorithm.
Po0ria/BPMax
Implementation of BPMax algorithm using AlphaZ Framework
DynexMarketplace/quantum-rna-folding
This demo program takes an RNA sequence and applies a quadratic model in pursuit of the optimal stem configuration.
raph-m/RNA-folding
RNA folding project in C++
Saphereye/RNA-folding-simulation
Implementation and visualization of dynamic programming based RNA secondary structure approximation