rna-seq-quantification

There are 5 repositories under rna-seq-quantification topic.

  • COMBINE-lab/salmon

    🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

    Language:C++79138844166

  • AlexsLemonade/scpca-nf

    scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data

    Language:R1353812

  • chi-0828/RNA-Abundance-Quantification-on-UPMEM

    Running state-of-the-art RNA-seq abundance quantification software "kallisto" on UPMEM DPU system

    Language:C7102

  • chi-0828/UpPipe

    UpPipe is an RNA abundance quantification design on a real processing-near-memory system (UPMEM DPU); the paper of this project is published in Design Automation Conference (DAC) 2023

    Language:C6100

  • Arnaroo/INDEGRA

    Accurate, easy and integrated suit to compare RNA samples with different degradation levels, quantify decay rates per-transcript and correct for degradation-induced artifacts in differential gene/transcript comparisons

    Language:Python200