rnaseq-analysis
There are 22 repositories under rnaseq-analysis topic.
grimmlab/BookChapter-RNA-Seq-Analyses
Best practice RNA-Seq analysis pipeline for reference-based RNA-Seq analysis
dib-lab/elvers
(formerly eelpond) an automated RNA-Seq workflow system
ShawnWx2019/WGCNA-shinyApp
shiny app for WGCNA...
Center-for-Health-Data-Science/bulkDGD
Code, documentation, and tutorials for the DGD model trained on bulk RNA-Seq data.
INMEGEN/Pipelines_INMEGEN
Flujos de trabajos desarrollados y automatizados en el Inmegen para el procesamiento de datos genómicos y transcriptómicos.
CGAT-Group/DICAST
Docker Integrated Comparison of Alternative Splicing (AS) Tools. Benchmarking AS tools and genomic alignment tools.
10adavis/DESeq2_fGSEA_Flow
This repo is a template for running differential gene expression analysis of RNA-seq count data followed by gene set enrichment analysis. This workflow is run in R using Rmarkdown. It is based around the popular R packages, DESeq2, fGSEA, and others.
FINitenet/TRMRNAseqTools
The TRMRNASeqTools is a SHELL and Python based pipeline designed for automatic general analysis for TRM sRNA sequencing data in supported plants.
Alruta/Kallisto-DESeq2_Pipeline
A script to analyze with DESeq2 data from Kallisto. You maybe are interested only in DESeq2 part and its analisis and representation :)
AwesomeTimeTraveler/IntegrativeMultiOM
IMOM - A pipeline for interacting with, processing, and analyzing multi-OM datasets in phylogenetic and evolutionary context
biofcallejas/pysplicing
Splicing assembly for non-model organisms using RNAseq data
jdutel42/Project_2
This GitHub repo supports a project, led by Delphine Galiana. It explores the innate immune response to viral infections, focusing on the role of plasmacytoid dendritic cells (pDCs) and the impact of alternative splicing in their antiviral response.
jvandinter/Cornel_et_al_2023
Code for Cornel et al., Submitted (2023)
mariachiaragrieco/bulk-RNAseq
bulk-RNAseq analysis for Transcriptomics Course 2021 (MSc Bioinformatics for Computational Genomics)
michalbukowski/rnaseq-pipeline-1
Simple Snakemake RNA-Seq pipeline
pawelqs/omicsTools
Set of classes, codes and scripts which I use for Omics data analysis
sturkarslan/RNASeq-Analysis
Custom workflow for analysis of RNAseq data
vjmarteau/nf-bulk-pipeline
nf-pipeline template for custom data analysis, renders report
dmgatti/RNA_Sequencing
RNA Sequencing Data Analysis for Beginners
kfarleigh/ResearchersGuideToPopulationGenomics
A book that discusses topics and contains tutorials relevant to population genomics
kiranfranklin999/Breast_cancer_survival_pred
Breast Cancer Survival Prediction