salmonella
There are 14 repositories under salmonella topic.
phac-nml/sistr_cmd
SISTR (Salmonella In Silico Typing Resource) command-line tool
apredeus/10k_genomes
Various scripts for efficient processing of 10k Salmonella genomes
CFSAN-Biostatistics/bettercallsal
Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.
superphy/AMR_Predictor
Machine learning methods to predict the anti-microbial resistance of Salmonella.
amrnet/amrnet
The AMRnet dashboard aims to make high-quality, robust and reliable genome-derived AMR surveillance data accessible to a wide audience
ImperialCollegeLondon/cgps-genotyphi
CGPS implementation of Genotyphi for assembled genomes.
jimmyliu1326/SamnSorter
Fast assortment of Salmonella genomes into stable clusters using phylogenetic placement and kNN classifier
aongithub172/recsalmo
Bioinformatics tool for Salmonella WGS analysis
BehnsenLab/Siderophores
Xenosiderophores produced by gut commensal fungi or present in the diet promote Salmonella enterica serovar Typhimurium growth and gut colonization
ChristopheVdE/Illumina-pipeline-pathogenwatch
Salmonella typhi; analysis pipeline for Illumina reads
superphy/prairiedog
next-gen pangenome graphs for predictive genomics
pommevilla/pesica
Detection, extraction, and cluster assignment of S. Infantis pESI