sequence-similarity

There are 6 repositories under sequence-similarity topic.

  • refresh-bio/FAMSA

    Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)

    Language:C++19973831

  • refresh-bio/kmer-db

    Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.).

    Language:C++9362719

  • refresh-bio/vclust

    Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes

    Language:Python893184
  • DIGS-tool

    giffordlabcvr/DIGS-tool

    Database-Integrated Genome Screening (DIGS) tool. Explore the dark genome using BLAST and a relational database.

    Language:Perl11856

  • refresh-bio/LZ-ANI

    Fast and accurate tool for calculating Average Nucleotide Identity (ANI) among virus and bacteria genomes

    Language:C++11231

  • DeepthiSudharsan/CGR-for-Sequence-Similarity

    (Semester 4) Intelligence of Biological Systems - End Semester Project

    Language:Jupyter Notebook4102