short-read-mapping

There are 6 repositories under short-read-mapping topic.

  • ksahlin/strobealign

    Aligns short reads using dynamic seed size with strobemers

    Language:C++1591117918

  • kaist-ina/BWA-MEME

    BWA-MEME: Faster BWA-MEM2 using learned-index

    Language:C++11392814

  • GZHoffie/bucket-map

    Implementation of BucketMap, a novel cache-efficient, bit-parallel and alignment-free short read mapping algorithm.

    Language:C++4140

  • GeoGenetics/bwa

    Burrow-Wheeler Aligner for short-read alignment (optimized for aeDNA)

    Language:C0100

  • mehdimerbah/BW_Seminar

    This is a repository for a seminar on Bowtie2 and its use of the Burrows-Wheeler Transform and FM-index in short-read sequence mapping.

    Language:Python0201

  • ElsevierSoftwareX/SOFTX_2020_130

    Whisper 2: indel-sensitive short read mapping. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711021000376

    Language:C++10