signal-extraction
There are 6 repositories under signal-extraction topic.
bahanonu/ciatah
CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: https://git.io/ciatah_docs. Formerly known as calciumImagingAnalysis (ciapkg).
JinghaoLu/MIN1PIPE
A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.
bahanonu/imaging_tools
A table containing imaging analysis tools for biology, with a focus on calcium imaging.
Xylambda/kalmankit
Multidimensional implementation of standard and extended Kalman Filters
elmarmertens/ABCprecisionsampler
Precision-based sampling from state space models that have no measurement error
Julian-Webb/auto-cell-signal-extraction
Compares the signals from different regions of interest (ROIs) to determine which ROIs belong to the same cell. Used for glioblastoma images.