single-molecule-footprinting

There are 5 repositories under single-molecule-footprinting topic.

  • Krebslabrep/Kreibich_2023_5mC_at_enhancers

    Analysis of Single Molecule Footprinting (SMF) data for the analysis of DNA methylation, chromatin accessibility and TF binding. The repository contains all primary code to reproduce the main analyses for the publication "Single molecule footprinting identifies context-dependent regulation of enhancers by DNA methylation" (Kreibich et al., 2023)

    Language:R4000

  • jkmckenna/smftools

    Single Molecule Footprinting Analysis in Python

    Language:Python1200

  • jkmckenna/smfplot

    Python visualization of single locus SMF data

    Language:Jupyter Notebook0100

  • fmicompbio/footprintR

    Tools for working with single-molecule footprinting data

    Language:R415

  • WENDYYCM/SAMOSA_ZMW_Selector_Script

    Enhanced zmw_selector.py + New run_zmw_selector.sh

    Language:Python10