species-tree
There are 8 repositories under species-tree topic.
dongwei1220/EasySpeciesTree
Easily construct the ML species tree with single-copy gene shared by different species.
reslp/phylociraptor
rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference
tomas-fer/HybPhyloMaker
Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees)
Mahim1997/wQFM-2020
wQFM implementation in Java
V-Z/hybseq-scripts
Set of scripts to process HybSeq target enrichment HTS data (on computing grids).
islamazhar/STELAR
Dynamic Programming (DP) based software Software to Estimate Species Tree by maximizing triplet agreement.
niconm89/BUSCO2Tree
This pipeline helps to build a phylogenetic tree using the BUSCO results over a group of species/genomes/proteomes/transcriptomes.
juliawiggeshoff/astral-species-tree
This is a Snakemake workflow that calculates maximum-likelihood gene trees with IQ-TREE and 100 bootstrap replicates for each tree. Then, consensus trees are produced and combined to infer a species tree following the multispecies coalescent model with ASTRAL. Imported from my GitLab.