species-tree

There are 8 repositories under species-tree topic.

  • dongwei1220/EasySpeciesTree

    Easily construct the ML species tree with single-copy gene shared by different species.

    Language:Python2514

  • reslp/phylociraptor

    rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference

    Language:Python245125

  • tomas-fer/HybPhyloMaker

    Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees)

    Language:Shell1911149

  • Mahim1997/wQFM-2020

    wQFM implementation in Java

    Language:Perl16333

  • V-Z/hybseq-scripts

    Set of scripts to process HybSeq target enrichment HTS data (on computing grids).

    Language:Shell4203

  • islamazhar/STELAR

    Dynamic Programming (DP) based software Software to Estimate Species Tree by maximizing triplet agreement.

    Language:Python3113

  • niconm89/BUSCO2Tree

    This pipeline helps to build a phylogenetic tree using the BUSCO results over a group of species/genomes/proteomes/transcriptomes.

    Language:Python2201

  • juliawiggeshoff/astral-species-tree

    This is a Snakemake workflow that calculates maximum-likelihood gene trees with IQ-TREE and 100 bootstrap replicates for each tree. Then, consensus trees are produced and combined to infer a species tree following the multispecies coalescent model with ASTRAL. Imported from my GitLab.

    Language:Python0100