splicing-analyses

VCCRI/Ularcirc

An R-shiny app that provides backsplice and canonical splicing analysis for both circular RNA (circRNA) and parental transcripts

gagneurlab/FRASER-old-gagneurlab

vrmelo/SPLICE-q

SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.

matteocereda/RNAmotifs

RNAmotifs is an integrated R, C++, python softwares that evaluates the sequence around differentially regulated alternative exons to identify clusters of short sequences, referred to as multivalent RNA motifs, bound by RNA-binding proteins

guigolab/ipsa-nf

Integrative Pipeline for Splicing Analyses (IPSA) in Nextflow

TommasoTarchi/autoRNAseq

Automated pipeline for RNAseq data analysis using nextflow and singularity.

BatistaLab/Exon9A_Nanopore

Nanopore direct RNA sequencing for cryptic splice mutation in HLRCC

SoniaRuiz/splicing-accuracy-manuscript

Code for the manuscript "Splicing accuracy varies across human introns, tissues and age".

sivkri/splicing-events-calculation

Calculate five major splicing events using rMATS followed by annotation