sratoolkit

There are 12 repositories under sratoolkit topic.

saketkc/pysradb
Package for fetching metadata and downloading data from SRA/ENA/GEO
Language:Python339 11 14163
uc-bd2k/GREP2
GEO RNA-seq Experiments Processing Pipeline
Language:R21 9 310
gversmee/dbgap2x
Language:Jupyter Notebook8 2 157
AnstMikh/DNA
pipeline: from sra, bed, vcf to plink
Language:Jupyter Notebook2 1 00
yodeng/srautils
fast utils for fetch and dump NCBI SRA archive raw data
Language:Python1 1 00
humzaashraf1/RNASeq-Analysis-of-Replicative-Aging
RNA-seq analysis from FASTQ to differential gene-expression using open-source tools
Language:Jupyter Notebook0 1 00
jranaraki/DecryptUsingSRAToolkit
Decrypt the encrypted genome data files using SRA Toolkit
0 0 00
LeoooJR/ReproHackathon
A reproducible RNA-Seq analysis pipeline for Staphylococcus aureus under antibiotic stress, utilizing Nextflow and Singularity. It involves genome mapping, read counting, and statistical analysis to identify differentially expressed genes (DEGs) and generates key visualizations.
Language:R0 1 70
Morteza1814/PARMIK
PARMIK is a fast and memory-efficient tool for identifying the "Partial Match" region between two genomic sequences.
Language:C++0 1 01
ZuberLab/sra-nf
Download Raw Reads from SRA Archive
Language:Nextflow0 2 00
adityamahadevaniyer/RNA-seq
RNA-seq code with Bowtie alignment and generating strain-specific counts using Emase
Language:HTML1 0
IBCHgenomic/sra-explorer
explore sra databases and sequence retrieval
Language:Shell1 0