stochastic-reaction-networks

There are 9 repositories under stochastic-reaction-networks topic.

  • hammouc/Multilevel-Monte-Carlo-with-Importance-Sampling-for-SRNs

    This repository includes Matlab codes/routines that were used in our manuscript entitled "Importance sampling for a robust and efficient multilevel Monte Carlo estimator for stochastic reaction networks" that can be found in this preprint: https://arxiv.org/abs/1911.06286

    Language:MATLAB10501

  • voduchuy/NumCME.jl

    Direct solution of the Chemical Master Equation in Julia.

    Language:Julia8202

  • voduchuy/pypacmensl

    Python wrapper for PACMENSL.

    Language:Cython3100

  • voduchuy/pacmensl

    Library for parallel direct solution of the Chemical Master Equation (CME).

    Language:C++1400

  • voduchuy/StMcmcCme

    This repository contains the Python modules and scripts to reproduce the results in the paper "Catanach, Vo, Munsky. IJUQ 2020."

    Language:Jupyter Notebook1300

  • voduchuy/CudaFsp

    CUDA-based implementation of the Finite State Projection (FSP) algorithm.

    Language:Cuda0100

  • voduchuy/Kalb_Vo_2021

    This repository contains the code used for the data modeling and analysis presented in Kalb, Vo et al. Scientific Reports 11, 2021.

    Language:Jupyter Notebook0000

  • voduchuy/KrylovFspSsa

    Fortran implementation of the Krylov-FSP-SSA algorithm for solving the Chemical Master Equation.

    Language:Fortran10

  • voduchuy/Vo_2019_ADAMHFSP

    Code to reproduce the numerical results in the manuscript, "Bayesian estimation of stochastic gene expression using multifidelity models "Huy D. Vo*, Zachary R. Fox, Ania A. Baetica, Brian E. Munsky.

    Language:MATLAB00