subclone-identification

There are 5 repositories under subclone-identification topic.

  • AntonioDeFalco/SCEVAN

    R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of malignant cells, identifies subclonal structures and analyses the specific and shared alterations of each subpopulation.

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  • caravagnalab/mobster

    Model-based subclonal deconvolution from bulk sequencing.

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  • keyuan/ccube

    Bayesian mixture models for estimating and clustering cancer cell fractions

    Language:R24458

  • zengliX/SIFA

    SIFA: identify tumor subclones and infer phylogenetic tree from WGS data

    Language:R3100
  • CRUST

    Subhayan18/CRUST

    R package for clonal deconvolution

    Language:R1201