taxdump

There are 8 repositories under taxdump topic.

shenwei356/taxonkit
A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV
Language:Go369 9 9629
zyxue/ncbitax2lin
🐞 Convert NCBI taxonomy dump into lineages
Language:Python139 8 1729
shenwei356/bio
A lightweight and high-performance bioinformatics package in Golang
Language:Go92 7 69
shenwei356/gtdb-taxdump
GTDB taxonomy taxdump files with trackable TaxIds
Language:R46 6 82
shenwei356/taxid-changelog
NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.
Language:R22 2 21
shenwei356/ictv-taxdump
NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)
20 4 31
guyleonard/taxdump_edit
:seedling: :arrow_right: :deciduous_tree: Add new taxa or taxonomic groups to the NCBI Taxdump files
Language:Perl18 4 12
CVUA-RRW/taxidtools
Python library to deal with taxonomic IDs and lineages from the NCBI's Taxdump files
Language:Python0 1 62