taxonomic-analysis

There are 4 repositories under taxonomic-analysis topic.

  • HKU-BAL/MegaPath-Nano

    MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read Metagenomics; MegaPath-Nano-Amplicon: filtering module for metagenomic amplicon data

    Language:C14611

  • danielapierro/blobtools_tutorial

    Create a blobplot of a holobiont assembly without a reference genome. Example code and data are provided.

    Language:Perl2200

  • CALeDNA/Anacapa

    Written by Emily Curd (eecurd@g.ucla.edu), Jesse Gomer (jessegomer@gmail.com), Gaurav Kandlikar (gkandlikar@ucla.edu), Zack Gold (zjgold@ucla.edu), Max Ogden (max@maxogden.com), Lenore Pipes (lpipes@berkeley.edu)and Baochen Shi (biosbc@gmail.com). Assistance was provided by Rachel Meyer (rsmeyer@ucla.edu).

    Language:Python1101

  • ImPaisley/TaxaAbundance_Test

    Outlines the process of testing for statistical differences in certain taxa by group utilizing the phyloseq, tidyverse, and various statistical packages within R.

    Language:R