tissue-analysis

There are 13 repositories under tissue-analysis topic.

  • TissueImageAnalytics/tiatoolbox

    Computational Pathology Toolbox developed by TIA Centre, University of Warwick.

    Language:Python465816898

  • ciccalab/SIMPLI

    SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.

    Language:R38555

  • c-arthurs/QuArray

    An application for exporting and analysing tissue array whole slide image files

    Language:Python8104

  • VGeorgii/Microsa

    Python library designed for tissue microenvironment spatial analysis

    Language:Python4132

  • aravi11/EAGNN

    Official PyTorch Implementation of paper 'Edge-Based Graph Neural Networks for Cell-Graph Modeling and Prediction'

    Language:Python3200

  • tonibois/MARTA

    Myocyte Automatic Retrieval and Tissue Analyzer (https://www.mdpi.com/2218-273X/10/9/1334)

    Language:Python3000

  • smujiang/TumorStromaReaction

    Quantitatively evaluate tumor stroma reaction within ovarian cancers, and establish assocaitaions to prognosis, molecular signatures.

    Language:Python2100

  • gletort/Epicure

    Napari plugin to ease manual correction of epithelial movie segmentation

    1

  • ShayanDodge/3D-FDTD-Plane-Wave-Vessel-Skin-MATLAB

    This repository provides a MATLAB implementation of the 3D Finite Difference Time Domain (FDTD) method for simulating the propagation of plane electromagnetic waves in real skin.

    Language:MATLAB110

  • cjrobinson8/Complex-Wound-Analysis-using-AI

    Repository for publication outlining a number of computational models for complex wound analysis in both mice and humans.

    0100

  • intsynko/TissueDefectAnalysis

    Graduated Work by recogmition tissue defect. For recognition defect zones used Local Binary Pattern, for recognition border defect used Gabor's Veivlet.

    Language:C#10

  • skar-2274/Muscle-Contraction-Motion-Detection

    A script to plot traces of muscle contractions from video recordings. This is part of my ongoing PhD work.

    Language:Python10

  • SlavovLab/Protein-Clearance

    Analysis from Leduc and Slavov (2025): Protein degradation and growth dependent dilution substantially shape mammalian proteomes

    Language:R