trimmomatic
There are 13 repositories under trimmomatic topic.
digo4/Clinical-Genomics
Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
shencangsheng/Trimmomatic-pigz
A 10x faster version base on official trimmomatic. The results of trimmomatic-pigz are exactly the same with official trimmomatic.
hanielcedraz/BAQCOM
Quality Control, Mapping and Reads Count for RNA-Seq Analysis
mehdimerbah/WES
Whole Exome Sequencing end-to-end pipeline. Starting from whole exome fastq files: Data QC, Adapter Trimming, Reference Genome Alignment, SAM/BAM Validation, Data Recalibration and Variant Calling.
kalilamali/FishDNA_pipeline
Step-by-step approach in the analysis of Rainbow trout DNA from raw reads to population insights using fastqc, trimmomatic, bwa, vcftools, plink, and R.
mansikath/whole-genome-sequencing-pipeline
A comprehensive workflow for de novo assembly of whole-genome shotgun sequencing data using Velvet, followed by BLAST searches to analyze assembled contigs.
Moha-cm/RNAseq-Analysis
Bulk Rna-seq Analysis
adityamahadevaniyer/Cut-and-Tag
Slurm scripts for analyzing bulk Cutandtag data
anita-brzoza/university_projects
The repository contain directories of projects done during the bioinformatics degree program
humzaashraf1/RNASeq-Analysis-of-Replicative-Aging
RNA-seq analysis from FASTQ to differential gene-expression using open-source tools
julianneyang/transcriptomicsonhoffman
Walks through installation and usage of FASTQC, MultiQC, Trimmomatic, and Salmon for transcriptomic data preprocessing. Includes Grid Engine shell scripts that can be looped over many files in a directory.
rashidalyahyai/Trimmomatic
Back Up of Trimmomatic for learning and testing/modification. Find Original Code at: https://github.com/usadellab/Trimmomatic
adityamahadevaniyer/RNA-seq
RNA-seq code with Bowtie alignment and generating strain-specific counts using Emase