tumor-evolution

There are 18 repositories under tumor-evolution topic.

  • AntonioDeFalco/SCEVAN

    R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of malignant cells, identifies subclonal structures and analyses the specific and shared alterations of each subpopulation.

    Language:HTML93412624

  • FunGeST/Palimpsest

    An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.

    Language:R6986119

  • algo-cancer/PhISCS-BnB

    A Fast Branch and Bound Algorithm for the Perfect Tumor Phylogeny Reconstruction Problem

    Language:Python9205

  • raphael-group/scarlet

    SCARLET (Single-cell Algorithm for Reconstructing Loss-supported Evolution of Tumors) is an algorithm that reconstructs tumor phylogenies from single-cell DNA sequencing data. SCARLET uses a loss-supported model that constrains mutation losses based on observed copy-number data.

    Language:Limbo81024

  • pedrofale/tumorevo

    Simulate and illustrate tumor evolution.

    Language:Python6100

  • cancersysbio/gastric_organoid_evolution

    Deterministic evolution and stringent selection during pre-neoplasia

    Language:HTML5801

  • zengliX/SIFA

    SIFA: identify tumor subclones and infer phylogenetic tree from WGS data

    Language:R3100

  • AngryMaciek/warlock

    Warlock is a snakemake workflow to spawn multiple demons (deme-based oncology models) as jobs running around on a cluster environment 😈😈

    Language:Python22210
  • GlioMod

    RJain12/GlioMod

    https://doi.org/10.5281/zenodo.6941367 - Spatiotemporal-Aware Glioblastoma Multiforme Tumor Growth Modeling with Deep Encoder-Decoder Networks

    Language:MATLAB2100

  • alexandrutomescu/SNV-PPILP

    Refined SNV calling for tumor data using perfect phylogenies and ILP

    Language:Python1100

  • ggirelli/tema

    TEMA (Tumor Evolution Manager and Analyzer)

    Language:PHP120

  • ggirelli/tepp

    Tumor Evolution Paths Project

    Language:R120
  • jellyfish

    HautaniemiLab/jellyfish

    Jellyfish Plotter for tumor evolution visualization

    Language:TypeScript10

  • HautaniemiLab/jellyfisher

    R htmlwidget for Jellyfish

    Language:R10

  • Ninavd/tumor-dynamics-abm

    Project on ABM tumor growth for the Agent-Based Modeling course at the UvA 2023-2024

    Language:Python1100

  • abrie/tumor-gradient

    Measuring a tumor's density gradient during treatment.

    Language:Python20

  • annalisaxamin/CHGproject

    Project for the course of Computational Human Genomics, held by Francesca Demichelis (a.y. 2021-2022) @ University of Trento

    Language:Shell10

  • cabustillo13/Analisis-DICOM-biomedicas

    Comparación y análisis de la progresión de tumores en cerebros.

    Language:Python00