tximport
There are 8 repositories under tximport topic.
complextissue/pytximport
Feature-rich Python implementation of the tximport package for gene count estimation.
bissessk/RNA-seq-Analysis-of-Control-and-NRDE2-depleted-Breast-Cancer-Cells
Performed a differential gene expression analysis with RNA-seq that compares the expression in human control breast cancer cell lines with lines treated by silencing the NRDE2 gene. A Salmon + tximport + DESeq2 workflow was conducted to pursue this.
tdayris-perso/rna-dge-salmon-deseq2
Perform differential analysis from FastQ files with Salmon, tximport, and DESeq2
jianhong/genomictools
docker file for genomic tools
washingtoncandeia/kallisto_sleuth
Análise de RNA-seq - Abundância de Transcritos Utilizando kallisto, tximport e DESeq2
washingtoncandeia/tximport
Análises de expressão diferencial de dados de sequenciamento de segunda geração (high-throughput sequencing reads, RNA-seq) realizadas utilizando as ferramentas kallisto.
SherineAwad/BulkRNASeq
Snakemake workflow for Bulk RNASeq at both genome level and transcripts level.
ishamada/RNA-seq-workflow-gene-level
RNA-seq workflow: gene-level exploratory analysis and differential expression.