uk-biobank

There are 24 repositories under uk-biobank topic.

  • kenhanscombe/ukbtools

    An R package to manipulate and explore UK Biobank data

    Language:HTML10194326

  • benniatli/BrainAgePredictionResNet

    3D residual neural network that predicts age based on brain MRI images (implemented using TensorFlow 2).

    Language:Jupyter Notebook623119

  • rivas-lab/covid19

    As a part of COVID-19 Host Genetics Initiative, we perform the following set of analyses to better understand the genetic basis of COVID-19 susceptibility and severity.

    Language:Jupyter Notebook43507

  • hakyimlab/ukbrest

    ukbREST: efficient and streamlined data access for reproducible research of large biobanks

    Language:Python386622

  • spiros/phemap

    Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records

    Language:Python34013

  • philipdarke/ukbb-ehr-data

    Prepare UK Biobank Electronic Health Record data for research

    Language:R25245

  • bjcairns/ukbschemas

    Use R to generate a database containing the UK Biobank data schemas from http://biobank.ctsu.ox.ac.uk/crystal/schema.cgi

    Language:R204213

  • rmgpanw/ukbwranglr

    R package for UK Biobank data wrangling.

    Language:R18281

  • tarolangner/ukb_segmentation

    PyTorch implementation for 2.5D U-Net segmentation of UK Biobank neck-to-knee body MRI

    Language:Python17303

  • msesia/knockoffgwas

    A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.

    Language:C++14140

  • kenhanscombe/ukbkings

    KCL Interface to UKB Project Data on Rosalind HPC cluster

    Language:R13402

  • philipdarke/ukbbhelpr

    Helper functions for UK Biobank data

    Language:R12202

  • machiela-lab/UKBBcleanR

    Prepare electronic medical record data from the UK Biobank for time-to-event analyses

    Language:R11301

  • ludgergoeminne/organAging

    This repository accompanies our Cell Metabolism manuscript "Plasma protein-based organ-specific aging and mortality models unveil diseases as accelerated aging of organismal systems"

    Language:R8103

  • tarolangner/mri-biometry

    Neural Networks for Deep Regression on UK Biobank neck-to-knee body MRI

    Language:Python7201

  • niekverw/ukpheno

    Create binary traits for UKbio using ICD/OPER/medication/self reports/age of diagnosis/visit-dates etc). The current output includes variables on history, study visit, future, time-to-first-event, episode-duration. this is a starting point to construct your favorite trait in ukb. The code was written on the go, so not super clean code..

    Language:R6103

  • kenhanscombe/ukbproject

    A python CLI to setup and manage a UKB project directory

    Language:Python5200

  • philipdarke/ehr-codesets

    Code sets for Electronic Health Record research

    4201

  • rivas-lab/AncestryOmicsUKB

    Using Pre-training and Interaction Modeling for ancestry-specific disease prediction using multiomics data from the UK Biobank

    Language:R1100

  • pbf-testing/flip

    Predict improved fatty liver index (FLI) to reflect liver fat content using regression modelling.

    Language:Python00

  • RyanokTCD/UnPAC

    UnPAC aims to make research on large scale imaging databases more efficient.

    Language:Python00

  • v-sundaresan/omnisup_agepred_semidann

    Omni-supervised domain adversarial training for WM hyperintensity segmentation

    Language:Python0100

  • aorliche/ukb-longitudinal-smt-vis

    Finding of increased Somatomotor-Visual functional connectivity in the UKB longitudinal cohort

    Language:Jupyter Notebook101

  • rivas-lab/snpnet-Cox-paper

    Repo for "Fast Lasso Method for Large-scale and Ultrahigh-dimensional Cox Model with Applications to UK Biobank"

    201