untargeted-metabolomics

There are 15 repositories under untargeted-metabolomics topic.

  • computational-metabolomics/dimspy

    Python package for processing direct-infusion mass spectrometry-based metabolomics and lipidomics data

    Language:Python196389

  • idslme/IDSL_MINT

    A Deep Learning Framework to Interpret Raw Mass Spectrometry (m/z) Data

    Language:Python16421
  • IDSL.IPA

    idslme/IDSL.IPA

    Intrinsic Peak Analysis (IPA) pipeline for peak-picking in large-scale untargeted small molecule analysis including metabolomics, lipidomics, exposomics, and environmental studies.

    Language:R14421

  • jcapelladesto/geoRge

    geoRge: a computational tool for stable isotope labelling detection in LC/MS-based untargeted metabolomics

    Language:R103126

  • LizzyParkerPannell/Untargeted_metabolomics_workflow

    Collaborative workflow for untargeted metabolomics data processing and analysis using open-source tools. https://doi.org/10.3390/metabo13040463

    Language:R82263

  • Yaser218/Untargeted-Metabolomics-Clustering

    VOCCluster: Untargeted Metabolomics Feature Clustering Approach for Clinical Breath Gas Chromatography - Mass Spectrometry Data

    Language:Python5004

  • mbongaerts/Metchalizer

    Language:Jupyter Notebook2201

  • UMCUGenetics/dIEM

    For untargeted metabolomics, this tool calculates probability scores for metabolic disorders. In addition, it provides visual support with violin plots of the mass spectrometry (DI-HRMS) measurements for the lab specialists.

    Language:R282

  • Christ14n97/MSc_Untarg_Metabo_Workflow

    My MSc thesis focused on the improvement of metabolite biomarkers annotation. The resulting workflow combined common unsupervised-supervised ML models with graph-based analysis of metabolic reconstructions.

    1100
  • HighResMS

    JoseRaulBS/HighResMS

    High Resolution Software for Mass Spectrometry

    Language:Python1101

  • Lacterd/HeuSMA

    A Heuristic Strategy for Metabolomics Analysis based on multiple chromatographic gradients to enhance metabolite coverage in untargeted metabolomics analysis.

    Language:Python1

  • CeMOS-Mannheim/M2ara

    M²ara, a R shiny web app for feature selection in cell-based assays.

    Language:HTML0001

  • CeMOS-Mannheim/MALDIcellassay

    Detects high variance signals and generates dose-response curves to futher investigate candidate signals.

    Language:R00

  • CNIC-Proteomics/TurboPutative-web

    Language:HTML30

  • Ramtin92/PUMA

    Pathway Activity Analysis and Metabolite Annotation for Untargeted Metabolomics using Probabilistic Modeling

    Language:Python10