variant-detection

There are 6 repositories under variant-detection topic.

  • HKU-BAL/Clair3

    Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

    Language:Python2581131431

  • bcgsc/ntEdit

    ✏️ Genome assembly polishing & SNV detection

    Language:C++6614199

  • rki-mf1/viruswarn-sc2

    VirusWarn-SC2 is a simple Variants of concern aLert system script for Sars-CoV2. Doc https://rki-mf1.github.io/vocal-doc/

    Language:HTML5391

  • GiatrasKon/INDELseek-Optimized-Implementations

    Optimized Python and C++ implementations of INDELseek, a Perl tool for detecting complex genetic indels in NGS data, with performance improvements, validation, and benchmarking against other variant callers.

    Language:C++0200

  • rki-mf1/VirusWarn-Flu

    A mutation-based alert system to prioritize concerning Influenza variants from sequencing data.

    Language:HTML00

  • jhudsl/GDSCN_Book_SARS_Galaxy_on_AnVIL

    Lab module and lectures for variant detection in SARS-CoV-2 using Galaxy

    Language:CSS7202