variation-graphs

There are 10 repositories under variation-graphs topic.

at-cg/PanAligner
Long read aligner for cyclic and acyclic pangenome graphs
Language:C35 4 14
dubssieg/pancat
Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
Language:Python31 2 151
kevsilva/StrainFLAIR
Strain-level abundances estimation in metagenomic samples using variation graphs
Language:Python25 4 85
HopedWall/rs-gfatovcf
Rust implementation of Flavia95's GFAtoVCF
Language:Rust16 5 21
pangenome/spodgi
RDF and SPARQL ideas to build on top of [odgi](https://github.com/pangenome/odgi)
Language:Python11 5 144
dubssieg/gfagraphs
Library to parse, edit and handle in memory GFA graphs
Language:Python21
dubssieg/sharepg
Analysis of shared parts of a pangenome
Language:Python2
dubssieg/pangenome-notes
Notes upon pangenome graphs construction
Language:TypeScript1
heringerp/oxiqle
SPARQL endpoint to represent pangenomic data
Language:HTML1 0 01
jorgeavilacartes/panricci
Alignment of Pangenome Graphs with Ricci Flow
Language:Jupyter Notebook1 3 00