varscan

There are 7 repositories under varscan topic.

digo4/Clinical-Genomics
Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
Language:Shell13 2 05
PoisonAlien/varscan_accessories
accessory scripts for processing varscan somatic/copynumber outputs.
Language:Python8 3 310
nyuhuyang/RNAseq_pipeline
Pipeline of somatic variant analysis using Waldenstrom macroglobulinemia patient’s RNA-seq data, including tools like STAR, HTseq, VarScan in parallel computing in SGE clusters, Deseq2 and GSEA in R
Language:HTML2 0 01
HaoKuo/NGS-pipeline
GATK and VARSCAN analysis pipeline
Language:Python1 2 00
MatveySprindzuk/GenomicsSoftware
software for processing tuberculosis whole genome data. interface to the BWA, VarScan, SamTools etc.
0 0 00
sfragkoul/Varscan2VCF
Convert VarScan output to VCF format
Language:Python0 0 00
oicr-gsi/varscan
varscan repo contains code for Varscan workflow
Language:WDL9 0