virome

There are 13 repositories under virome topic.

  • kmcp

    shenwei356/kmcp

    Accurate metagenomic profiling && Fast large-scale sequence/genome searching

    Language:Go18264713

  • shandley/hecatomb

    hecatomb is a virome analysis pipeline for analysis of Illumina sequence data

    Language:Python5658612

  • mtisza1/Cenote-Taker2

    Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)

    Language:Shell552497

  • SegataLab/viromeqc

    ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichment score for each virome. The score is calculated with respect to the expected prokaryotic markers abundances in reference metagenomes

    Language:Python182121

  • DMnBI/ViBE

    ViBE: a hierarchical BERT model to identify viruses using metagenome sequencing data

    Language:Python9212

  • poursalavati/SOVAP

    The Soil Virome Analysis Pipeline (SOVAP) is designed to process, analyze, and annotate viromics and metagenomics data using cutting-edge tools, providing valuable insights into the virome and microbial communities found in complex environments, such as soil ecosystems.

    Language:Python6311

  • hivlab/discover-virome

    discover-virome: identify and quantify viruses from metagenomic assemblies

    Language:Python3201

  • hivlab/quantify-virome

    quantify-virome: identify and quantify viruses from metagenomic shotgun sequences

    Language:Python32161

  • ohmeta/MAGIC

    The Metagenome-Assembled Genome Inventory for Children (MAGIC)

    2300

  • AstraBert/VirBiCla

    A novel ML-based binary classifier to tell viral and non-viral long reads apart in metagenomic samples.

    Language:Python1200

  • raw937/SharkBay_virome

    microbialites stromatolites metagenomes metagenomics denovo-assembly

    Language:R110

  • shandley/decatomb

    Viral contig analysis (hecatomb-lite)

    Language:Python1110

  • XuepengSun/TomatoVirome-web

    website of tomato virome database

    Language:HTML0100