virulence-genes

There are 8 repositories under virulence-genes topic.

  • tseemann/abricate

    :mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes

    Language:Perl3722920192

  • fmalmeida/bacannot

    Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.

    Language:Nextflow984719

  • ncbi/stxtyper

    StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.

    Language:C++91401
  • WGCA

    icaromsc/WGCA

    JAMIRA is a reproducible Workflow for Integrative Exploration of Genomic Features of prokariotes

    Language:Python8212
  • Infant-Clostridium-perfringens-Paper

    raymondkiu/Infant-Clostridium-perfringens-Paper

    Source data files and sequence databases used in the paper

    Language:R230

  • IbrahimElzahaby/Erasmus_MC_Internship

    Plasmidome analysis to track the transfer route of AMR genes in bacteria

    Language:Jupyter Notebook1100

  • AmyOBro/MScProject

    An examination of genomic resistance and virulence of Escherichia marmotae dentified in deer faeces Portumna, Galway.

    Language:Shell0100

  • macyEpell/PAPER_Pell_NatureCommunications_2024

    This repository contains scripts used to collect and analyze data from whole genome sequences of clinical Streptococcus agalactiae (Group B Strep) isolates for the project described in the following manuscript: Pell, M.E. et al., bioRxiv, 2024-04-01.

    Language:R0100