whole-genome-alignment

There are 9 repositories under whole-genome-alignment topic.

  • medvedevgroup/SibeliaZ

    A fast whole-genome aligner based on de Bruijn graphs

    Language:C++14574919

  • gsneha26/SegAlign

    A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043

    Language:C++7054016

  • gsneha26/Darwin-WGA

    Co-processor for whole genome alignment

    Language:Verilog12216

  • nf-core/pairgenomealign

    Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results

    Language:Nextflow818624

  • fmalmeida/plot_nucmer

    A simple script to run an alignment with nucmer and visualise its results.

    Language:Shell7120

  • KiranJavkar/PRAWNS

    PRAWNS: A fast and scalable bioinformatics tool that generates an efficient pan-genome representation of closely related whole genomes to provide a concise list of genomic features

    Language:C++7141

  • henryjuho/WGAbed

    A package for handling whole genome alignments by Pádraic Corcoran and Henry Barton

    Language:Python6262

  • oist/plessy_pairwiseGenomeComparison

    Draft workflow for pairwise genome comparison. We recommend you use the new nf-core version instead: https://nf-cor.e/pairgenomealign

    Language:Nextflow54163

  • MafaldaSFerreira/Atlherr_inversion_evol

    Evolutionary genomics of chromosomal inversions in Atlantic herring

    Language:R1102