yeast

There are 60 repositories under yeast topic.

  • cryp_init_caller

    Language:R

  • SYSBIO

    SYSBIO repository of ENG4BIO group within Universitat Autònoma de Barcelona (UAB) mainly regarding K. phaffi modelling.

  • Experimental-data-analysis-protein-copy-number-in-polarity

    Microscopy data analysis for the paper: "Redundancy and the role of protein copy numbers in the cell polarization machinery of budding yeast"

    Language:MATLAB

  • Deleteome-Tools

    R code for identifying transcriptomic similarities in single-gene yeast deletion strains within the Deleteome compendium

    Language:R

  • Sfp1-Analysis

    Part of MSc Biology Project (1/2). This repo contains three different analysis pipelines, which all analyse microscopy images of yeast cells. Two calculate Sfp1 NC ratios, and one calculates nuclear and whole-cell volumes.

    Language:Jupyter Notebook

  • Synyin-Deed

    A program that uses the Synteny Index algorithm to compare between Eukaryotes.

    Language:Perl

  • yeastKODoublingTimes

    Available at: https://clstacy.github.io/yeastKODoublingTimes/ . Doubling time estimates for haploid KO library, data from doi: 10.1093/g3journal/jkac240

    Language:HTML

  • cnv_sims_inference

    Repo for: Avecilla et al (2022) Neural networks enable efficient and accurate simulation-based inference of evolutionary parameters from adaptation dynamics. PLOS Biology. doi:10.1371/journal.pbio.3001633

    Language:HTML

  • yeast-biology

    Molecular biology-related analysis with a focus on yeast strains used in the AcubeSAT nanosatellite

    Language:HTML
  • unbeerable-pun

    unbeerable-pun

    We don't even like beer but here we are

    Language:Java

  • iSace_GSM

    Repository of a genome-scale metabolic model for Saccharomyces cerevisiae

    Language:Jupyter Notebook
  • IlPane

    IlPane

    Bread recipe design application

    Language:C#

  • yeast_xylanase

    A bioinformatic analysis was carried out with the goal of identifying carbohydrate-active enzymes in 332 published yeast genomes.

    Language:HTML

  • CRISPRi_Screening_AceticAcid

    Phenotypic screening of a CRISPRi strain library [Smith et 2017, Mol Syst Biol (2017)13:913] for acetic acid tolerance targeting essential and respiratory essential genes in Saccharomyces cerevisiae

    Language:R

  • Ssd1_CRACanalysis_2020

    Analysis of RNA binding by S. cerevisiae Ssd1, mostly CRAC sequencing data, August 2020 through June 2021

    Language:HTML

  • Autonomous_minimal_cell_cycle_oscillator

    Clb3-centered regulations are recurrent across distinct parameter regions in minimal autonomous cell cycle oscillator designs | Thierry D.G.A. Mondeel, Oleksandr Ivanov, Hans V. Westerhoff, Wolfram Liebermeister and Matteo Barberis | NPJ Syst. Biol. Appl. (2020) | https://doi.org/10.1038/s41540-020-0125-0

    Language:Jupyter Notebook

  • 2020-CB_ABC-selectivity

    Code-base for my ABC-selectivity paper in Current Biology

    Language:Jupyter Notebook

  • iRhto_memote

    Memote-created repository for Rhodosporidium toruloides model iRhto

    Language:HTML

  • PombeAgeingGenes.jl

    A Julia package to find ageing genes in S. pombe

    Language:Julia

  • CellFactory-ecYeastGEM

    Code and data for in silico strain design for enhanced production of +100 typical bio-products with yeast as a cell-factory. Predictions are based on the ecYeastGEM model avaiable at ecModels.

    Language:MATLAB

  • Yeastspot3D

    The package is used to conduct the mutation cluster analysis with aid of protein 3D structures for yeast.

    Language:R

  • idr0040-aymoz-singlecell

    Metadata files for the idr0040 submission

    Language:Java

  • 2018koyeast

    Analysis of multiple yeast strains whole-genome knockout libraries 🔬📈

    Language:Jupyter Notebook

  • isoenzymes_flux_balance

    Code for the paper Upon accounting for the impact of isoenzyme loss, gene deletion costs anticorrelate with their evolutionary rates.

    Language:Jupyter Notebook