Add reference file for taxa included in cube
peterdesmet opened this issue · 0 comments
peterdesmet commented
Since the cube will only contain taxonKey
s I would also produce a reference file, so it is clear what taxa are included under those keys. We have 3 groups:
- species + their infraspecific taxa + synonyms
- infraspecific taxa + synonyms
- synonyms
The reference file would be named nameofcube_taxa.csv
and be of the format:
taxonKey | scientificname | taxonRank | taxonomicStatus | includes |
---|---|---|---|---|
100 | Reynoutria japonica | species | accepted | 100 : Reynoutria japonica | 101: Fallopia japonica | 102: Reynoutria japonica var. japonica |
110 | Pastinaca sativa subsp. sativa | subspecies | accepted | 111: Anethum pastinaca |
120 | xxx | species | synonym |
Its information could be added to the cube with a simple left_join()
by the user.