tslearn-team/tslearn

ERROR: Could not build wheels for velocyto, which is required to install pyproject.toml-based projects

Deroline opened this issue · 1 comments

× python setup.py bdist_wheel did not run successfully.
│ exit code: 1
╰─> [43 lines of output]
['/private/var/folders/fl/b2bz90qj3g5gvl83n8n2vpvr0000gn/T/pip-install-wlbeuffp/velocyto_5ef48d94f2d94a81a2432272c2670d6d/setup.py', 'bdist_wheel', '-d', '/private/var/folders/fl/b2bz90qj3g5gvl83n8n2vpvr0000gn/T/pip-wheel-l3nb9o_l']
running bdist_wheel
running build
running build_py
creating build
creating build/lib.macosx-10.9-x86_64-cpython-310
creating build/lib.macosx-10.9-x86_64-cpython-310/velocyto
copying velocyto/transcript_model.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto
copying velocyto/diffusion.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto
copying velocyto/metadata.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto
copying velocyto/analysis.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto
copying velocyto/molitem.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto
copying velocyto/_version.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto
copying velocyto/neighbors.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto
copying velocyto/constants.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto
copying velocyto/estimation.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto
copying velocyto/init.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto
copying velocyto/feature.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto
copying velocyto/logic.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto
copying velocyto/indexes.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto
copying velocyto/utils.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto
copying velocyto/gene_info.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto
copying velocyto/r_interface.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto
copying velocyto/segment_match.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto
copying velocyto/counter.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto
copying velocyto/serialization.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto
copying velocyto/read.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto
creating build/lib.macosx-10.9-x86_64-cpython-310/velocyto/commands
copying velocyto/commands/velocyto.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto/commands
copying velocyto/commands/run.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto/commands
copying velocyto/commands/init.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto/commands
copying velocyto/commands/run_smartseq2.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto/commands
copying velocyto/commands/dropest_bc_correct.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto/commands
copying velocyto/commands/run_dropest.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto/commands
copying velocyto/commands/run10x.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto/commands
copying velocyto/commands/_run.py -> build/lib.macosx-10.9-x86_64-cpython-310/velocyto/commands
running build_ext
building 'velocyto.speedboosted' extension
creating build/temp.macosx-10.9-x86_64-cpython-310
creating build/temp.macosx-10.9-x86_64-cpython-310/velocyto
clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/dairui/anaconda3/include -fPIC -O2 -isystem /Users/dairui/anaconda3/include -I/Users/dairui/anaconda3/lib/python3.10/site-packages/numpy/core/include -I/Users/dairui/anaconda3/include/python3.10 -c velocyto/speedboosted.c -o build/temp.macosx-10.9-x86_64-cpython-310/velocyto/speedboosted.o -fopenmp -ffast-math
clang: error: unsupported option '-fopenmp'
error: command '/usr/bin/clang' failed with exit code 1
[end of output]

note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for velocyto
Running setup.py clean for velocyto
Failed to build velocyto
ERROR: Could not build wheels for velocyto, which is required to install pyproject.toml-based projects

Has anyone found a solution to this? I am still running into this bug trying to install velocyto