tszalay/poreseq

Installation error: No module named 'LoadData'

Closed this issue · 4 comments

pvap3 commented

Hello,
I am trying to run poreseq but i am getting following error,

Traceback (most recent call last):
File "/home/iob/.local/bin/poreseq", line 11, in
load_entry_point('poreseq', 'console_scripts', 'poreseq')()
File "/usr/lib/python3/dist-packages/pkg_resources/init.py", line 490, in load_entry_point
return get_distribution(dist).load_entry_point(group, name)
File "/usr/lib/python3/dist-packages/pkg_resources/init.py", line 2854, in load_entry_point
return ep.load()
File "/usr/lib/python3/dist-packages/pkg_resources/init.py", line 2445, in load
return self.resolve()
File "/usr/lib/python3/dist-packages/pkg_resources/init.py", line 2451, in resolve
module = import(self.module_name, fromlist=['name'], level=0)
File "/home/iob/Downloads/poreseq/poreseq/init.py", line 1, in
from LoadData import LoadAlignedEvents
ModuleNotFoundError: No module named 'LoadData'

Help will be really appreciated.

tszalay commented

Hi, I'm sorry, I'm not sure what I can tell you here. This tool has been superseded by a number of better options in the last 5-6 years, and I'm not even sure it's able to run anymore. It looks like it's probably a python 2 - python 3 problem, but I'm not entirely sure about that. Realistically I should probably remove it from the package repository entirely, but I would highly recommend you try to find a more recent tool for error correcting nanopore data.

pvap3 commented
tszalay commented

I'm not really sure, I haven't worked with nanopore sequencing data in almost six years, long enough that all of the tools since then are completely different. I would suggest looking for a recent review article or contacting someone still in the field. Good luck!

pvap3 commented