before folding into GenomicsStandardsConsortium org
Opened this issue · 2 comments
turbomam commented
- look for potential problems in log files from
make all
- maybe rerun in
DEBUG
mode, espconversion.log
? - conversion.log
- generation.log
- mkdocs.log
- maybe rerun in
- problems with docs generation and publishing?
- slow
- poorly organized documentation-related Makefile rules
- default docs home page broken? For now, use /mixs-source instead
- annotations don't appear in docs (previous appeared as comments)
- owl artifact looks funny in Protege... named individuals and object properties don't have labels
see also GenomicsStandardsConsortium/mixs#329
generation.log
- ~ 800 lines of
ERROR:root:Multiple slots with URI: https://w3id.org/mixs/terms/...
- ~ 22k lines of
ERROR:root:No PK for quantity_value
- Expected? From SQL DDL generation?
mkdocs.log
- ~ 20 lines like
Documentation file 'ph.md' contains a link to 'water_ph.md' which is not found in the documentation files
- from slot utilization mangling?
conversion.log
ERROR:root:No slot_uri for Environmental package food-food production facility
Structured comment name prod_label_claims
Package item production labeling claims
Definition Labeling claims containing descriptors such as...
Expected value text
Value syntax {text}
Example free range
Section
Requirement X
Preferred unit
Occurrence m
MIXS ID
github ticket MIXS:0001337
Unnamed: 13 #298
Name: 1431, dtype: object
ERROR:root:No slot_uri for Environmental package food-farm environment
Structured comment name prod_label_claims
Package item production labeling claims
Definition Labeling claims containing descriptors such as...
Expected value text
Value syntax {text}
Example free range
Section
Requirement X
Preferred unit
Occurrence m
MIXS ID
github ticket MIXS:0001337
Unnamed: 13 #298
Name: 1541, dtype: object
turbomam commented
make sure rdf/owl artifacts good
turbomam commented
- make sure rdf/owl artifacts good
- don't cal the jinja templates folder
templates
- doc_templates
- clarify generated vs release
- packages as classes vs checklist as mixins and combinations
- integration with hunter's docs page @ ???
- org-level gh pages should use canonical url
- symlink to readme for static portion of mkdocs
- add origin (core, checklist, package) to gen-docs pages
- color code?
- display annotations
- consistent capitalization