UC Davis Bioinformatics Core Training Page
Training course repository [Click on the URL to go to our main training page]
Davis, CA
Pinned Repositories
2017-August-Variant-Analysis-Workshop
From SNP and structural variant calling to GWAS.
2017-June-RNA-Seq-Workshop
Focused multi-day workshop covering the material needed for a successful RNA-Seq experiment.
2017_2018-single-cell-RNA-sequencing-Workshop-UCD_UCB_UCSF
2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF
2018-Dec-Genome-Assembly
Explore the world of genome assembly and gain an understanding of the power and pitfalls of sequencing technologies and assembly techniques.
2018-June-RNA-Seq-Workshop
Focused multi-day workshop covering the material needed for a successful RNA-Seq experiment.
2019-single-cell-RNA-sequencing-Workshop-UCD_UCSF
2019 single cell RNA sequencing Workshop @ UCD AND UCSF
2020-Advanced_Single_Cell_RNA_Seq
Building on material from Introduction to Single Cell RNA-Seq, this workshop aims to cover advanced topics, including TCR and trajectory analysis. Instruction in introductory analysis will not be provided.
2021-September-RNA-Seq-Analysis
A workshop for biologists preparing to run their first RNA Seq experiment. Participants should have some command line and R experience to participate successfully. We recommend our introductory courses for beginners! Single cell RNA Seq is covered in a separate course.
A-Primer-on-Using-the-Bioinformatics-Core-Administrated-Servers-and-Cluster-s-
A Primer on Using the Bioinformatics Core Administrated Servers and Cluster(s)
Bioinformatics-Genome-Assembly-and-Analysis-Workshop-Pac-Bio-and-10x-Genomics-
Bioinformatics: Genome Assembly and Analysis Workshop [ Pac Bio and 10x Genomics ] - Dec 2016
UC Davis Bioinformatics Core Training Page's Repositories
ucdavis-bioinformatics-training/2020-Advanced_Single_Cell_RNA_Seq
Building on material from Introduction to Single Cell RNA-Seq, this workshop aims to cover advanced topics, including TCR and trajectory analysis. Instruction in introductory analysis will not be provided.
ucdavis-bioinformatics-training/2020-Intro_Single_Cell_RNA_Seq
A workshop for biologists preparing to run their first single-cell RNA Seq experiment. No prior experience in bioinformatics necessary.
ucdavis-bioinformatics-training/ucdavis-bioinformatics-training.github.io
ucdavis-bioinformatics-training/2020-mRNA_Seq_Workshop
Focused multi-day workshop covering the material needed for a successful RNA-Seq experiment.
ucdavis-bioinformatics-training/2023-December-Single-Cell-RNA-Seq-Analysis
A three day hands-on workshop for researchers interested in single cell RNA-Seq
ucdavis-bioinformatics-training/2020-Genome_Assembly_Workshop
Explore the world of genome assembly and gain an understanding of the power and pitfalls of sequencing technologies and assembly techniques.
ucdavis-bioinformatics-training/ucdavis-bioinformatics-training_template
ucdavis-bioinformatics-training/2020-Epigenetics_Workshop
ATAC-Seq, ChIP-Seq, and whole genome bisulfite! An introduction to analyzing some of the most popular types of epigenetic data.
ucdavis-bioinformatics-training/2020-Variant_Analysis_Workshop
From SNP and structural variant calling to GWAS. Workshop cancelled due to public health concerns.
ucdavis-bioinformatics-training/2023-June-RNA-Seq-Analysis
ucdavis-bioinformatics-training/2023-June-Single-Cell-RNA-Seq-Analysis
ucdavis-bioinformatics-training/2024-July-Introduction-to-R-for-Bioinformatics
An introduction to the basic R programming for biologists. No data analysis experience necessary! Participants will gain skills necessary to run basic statistical analyses and generate figures in R.
ucdavis-bioinformatics-training/2020-Bioinformatics_Prerequisites_Workshop
An introduction to the basics of bioinformatics for biologists. No data analysis experience necessary.
ucdavis-bioinformatics-training/2023-Dec-Introduction-To-Python-For-Bioinformatics
This workshop consists of five half-day sessions, combining lecture and exercises to teach you the basics of programming (using python), with an emphasis on bioinformatics. Completion of this material will allow participants to get the most out of our other experiment-centric workshops. No previous python experience is necessary.
ucdavis-bioinformatics-training/2023-December-Spatial
A one-day exploration of spatial transcriptomics
ucdavis-bioinformatics-training/2023-February-Introduction-to-R-for-Bioinformatics
An introduction to the basic R programming for biologists. No data analysis experience necessary! Participants will gain skills necessary to run basic statistical analyses and generate figures in R.
ucdavis-bioinformatics-training/2023-July-Introduction-To-Python-For-Bioinformatics
This workshop consists of five half-day sessions, combining lecture and exercises to teach you the basics of programming (using python), with an emphasis on bioinformatics. Completion of this material will allow participants to get the most out of our other experiment-centric workshops. No previous python experience is necessary.
ucdavis-bioinformatics-training/2023-June-Advanced-Topics-in-Single-Cell-RNA-Seq-VDJ
A one-day exploration of a 10x V(D)J experiment for researchers with some knowledge of scRNA-seq experiments
ucdavis-bioinformatics-training/2023-May-Introduction-to-the-Command-Line-for-Bioinformatics
An introduction to command line basics for bioinformatics. Aimed at giving biologists with little-to-no data analysis experience the tools to successfully run bioinformatics workflows on the command line.
ucdavis-bioinformatics-training/2024-March-Introduction-to-the-Command-Line-for-Bioinformatics
An introduction to command line basics for bioinformatics. Aimed at giving biologists with little-to-no data analysis experience the tools to successfully run bioinformatics workflows on the command line.
ucdavis-bioinformatics-training/2023-June-Introduction-to-R-for-Bioinformatics
An introduction to the basic R programming for biologists. No data analysis experience necessary! Participants will gain skills necessary to run basic statistical analyses and generate figures in R.
ucdavis-bioinformatics-training/2023-Oct-Introduction-to-R-for-Bioinformatics
An introduction to the basic R programming for biologists. No data analysis experience necessary! Participants will gain skills necessary to run basic statistical analyses and generate figures in R.
ucdavis-bioinformatics-training/2023-October-Slurm-Seminar
A one and half hour seminar on how to use slurm on a cluster.
ucdavis-bioinformatics-training/2023-September-Introduction-to-the-Command-Line-for-Bioinformatics
An introduction to command line basics for bioinformatics. Aimed at giving biologists with little-to-no data analysis experience the tools to successfully run bioinformatics workflows on the command line.
ucdavis-bioinformatics-training/2024-April-Introduction-To-Python-For-Bioinformatics
This workshop consists of five half-day sessions, combining lecture and exercises to teach you the basics of programming (using python), with an emphasis on bioinformatics. Completion of this material will allow participants to get the most out of our other experiment-centric workshops. No previous python experience is necessary.
ucdavis-bioinformatics-training/2024-June-Advanced-Topics-in-Single-Cell-RNA-Seq-Multiome
ucdavis-bioinformatics-training/2024-June-Introduction-to-the-Command-Line-for-Bioinformatics
An introduction to command line basics for bioinformatics. Aimed at giving biologists with little-to-no data analysis experience the tools to successfully run bioinformatics workflows on the command line.
ucdavis-bioinformatics-training/2024-June-RNA-Seq-Analysis
ucdavis-bioinformatics-training/2024-June-Single-Cell-RNA-Seq-Analysis
ucdavis-bioinformatics-training/2024-March-Introduction-to-R-for-Bioinformatics
An introduction to the basic R programming for biologists. No data analysis experience necessary! Participants will gain skills necessary to run basic statistical analyses and generate figures in R.