Ubuntu 20.04 update Dockerfile fix
Closed this issue · 2 comments
Fix Dockerfile to successfully build with the recently updated Ubuntu 20.04 version. There are certain issues with gcc and proper dependencies/libraries for building HTSlib
This is the manifest for the version in the dev
tag from 2 months ago appears to be located here.
I checked it against the dev
image using apt list
and the versions and dependencies appear to match.
The tag appears to be dist-focal-amd64-20221019
which is listed as focal-20221019
on dockerhub. eg.) docker pull ubuntu:focal-20221019
I did some testing and it looks like the issue actually comes from python 3.10
-> 3.11
; updating the conda create statement to install python3.10 resolves the issue. For some reason, python3.11 fails to build pysam
(both pysam 0.19.0
and 0.20.0
fail to build with python3.11).