Error when running AMAPVox 2.0.0 on windows
Closed this issue · 10 comments
Hi team,
Application is awesome and really useful.
I have just done a clean install on a windows box and have an error when executing
AMAPVox::run()
The following message appears and the GUI fails to open:
Running AMAPVox 2.0.0 "NA" -Xms2048m --add-opens javafx.graphics/javafx.scene=ALL-UNNAMED -jar Warning message: In system2(unzip, args, stdout = NULL, stderr = NULL, invisible = TRUE) : '"internal"' not found
Any help in fixing this error is much appreciated, thanks!
I am also having issues with AMAPVox 2.0.0, I am just using AMAPVox::run(version="1.10.4") instead (so it does not try to use the latest version)
There are several steps involved in AMAPVox::run() function:
- check for latest version on server (presently 2.0.0)
- download tarball to temp location
- unzip tarball in cache directory
- run AMAPVox
Could you please let me know whether steps 1, 2 & 3 completed successfully ? Could you please also check that AMAPVox::getLocalVersions() includes version 2.0.0 ?
Running command should look like /path/to/java -Xms2048m --add-open etc. so there is definitely a bug there to identify Java binary embedded with AMAPVox 2.0.0.
@han16nah do you have same issue than @schFuelPC with "NA" instead of a path to java binary ?
This is the error I get when running AMAPVox::run(version="2.0.0")
trying URL 'https://forge.ird.fr/api/v4/projects/421/packages/generic/amapvox/2.0.0/AMAPVox-2.0.0.zip'
Warning in utils::download.file(url, zipfile, method = "auto", mode = "wb", :
downloaded length 0 != reported length 27
Warning in utils::download.file(url, zipfile, method = "auto", mode = "wb", :
cannot open URL 'https://forge.ird.fr/api/v4/projects/421/packages/generic/amapvox/2.0.0/AMAPVox-2.0.0.zip': HTTP status was '404 Not Found'
Error in utils::download.file(url, zipfile, method = "auto", mode = "wb", : cannot open URL 'https://forge.ird.fr/api/v4/projects/421/packages/generic/amapvox/2.0.0/AMAPVox-2.0.0.zip'
Show stack trace
AMAPVox::getLocalVersions() does not include 2.0.0
version
1 1.10.4
path
1 C:\Users\...\AppData\Local\AMAPVox\AMAPVox\bin\AMAPVox-1.10.4
Hi @philippeverley and @han16nah ,
Thanks for your help with this - much appreciated.
In answer to your question, I think 1,2 and 3 are being completed.
For reference this is the full error message I get when running AMAPVox::run(version="2.0.0")
trying URL 'https://forge.ird.fr/api/v4/projects/421/packages/generic/amapvox/2.0.0/AMAPVox-2.0.0-windows.zip'
Content type 'application/octet-stream' length 87114856 bytes (83.1 MB)
downloaded 83.1 MB
AMAPVox 2.0.0 successfully installed in C:\Users\...\AppData\Local\AMAPVox\AMAPVox\bin\AMAPVox-2.0.0-windows
Running AMAPVox 2.0.0
"NA" -Xms2048m --add-opens javafx.graphics/javafx.scene=ALL-UNNAMED -jar
Warning message:
In system2(unzip, args, stdout = NULL, stderr = NULL, invisible = TRUE) :
'"internal"' not found
AMAPVox::getLocalVersions() does not include 2.0.0
version path
1 1.10.4 C:\\Users\\...\\AppData\\Local\\AMAPVox\\AMAPVox\\bin\\AMAPVox-1.10.4
@han16nah: I reckon you are still using AMAPVox R package 0.13 which knows about new binaries location but does not know how to handle AMAPVox binaries >= v2.0 (packaged separately for Windows and Linux). Please update AMAPVox R package to version 1.0.
@schFuelPC thanks for confirmation on steps 1, 2, 3. I still do not understand why you get this "NA" instead of the Java command. Let me come back to you shortly.
@philippeverley
Correct, thanks. Now after updating the AMAPVox R package, I get the same error as @schFuelPC with "NA" instead of the path to the java binary
Check for updates. Latest version available 2.0.0
trying URL 'https://forge.ird.fr/api/v4/projects/421/packages/generic/amapvox/2.0.0/AMAPVox-2.0.0-windows.zip'
Content type 'application/octet-stream' length 87114856 bytes (83.1 MB)
downloaded 83.1 MBAMAPVox 2.0.0 successfully installed in C:\Users...\AppData\Local\AMAPVox\AMAPVox\bin\AMAPVox-2.0.0-windows
Running AMAPVox 2.0.0
"NA" -Xms2048m --add-opens javafx.graphics/javafx.scene=ALL-UNNAMED -jar
Hi @philippeverley and @han16nah ,
Just wanted to let you know that I ran AMAPvox on a linux box running Ubuntu 22.04 ie AMAPVox::run(version="2.0.0") and it opened the application successfully so it appears it might be a windows issue potentially?
Thanks
Thanks to both of you for your patience. Unzipping of the downloaded AMAPVox tarball on Windows was not working as expected, so AMAPVox consequently failed to run.
Fixed with release v1.0.1. On its way to CRAN. Waiting for acceptance on CRAN before tagging the release on Github. Sorry for taking so long in fixing it, last weeks were very busy.
That's awesome, thanks for your work on this @philippeverley
AMAPVox 1.0.1 is on CRAN, at last
https://cran.r-project.org/web/packages/AMAPVox/index.html