Pinned Repositories
2022-mcf10a-cancer-progression
bio-scripts
collection of scripts for bioinformatic analysis
Bioinfo_scripts
Misc scripts than can be useful for bioinformatics
BioinfUtil
Regularly used bioinformatics script for different purposes
bulk-HiC-analysis
bulk hic analysis code (bash & python)
Cancer_notes
A continually expanding collection of cancer genomics notes and data
ChIP-seq-analysis
ChIP-seq analysis notes from Ming Tang
CodeSpringLab
Collection of bioinformatics pipelines and scripts for Cold Spring Harbor Laboratory created by BSR (Bioinformatics shared resources)
CRC
custom_scripts
General repository with custom scripts for data processing, bioinformatic workflows and downstream analysis
usernicai's Repositories
usernicai/Cancer_notes
A continually expanding collection of cancer genomics notes and data
usernicai/2022-mcf10a-cancer-progression
usernicai/bio-scripts
collection of scripts for bioinformatic analysis
usernicai/Bioinfo_scripts
Misc scripts than can be useful for bioinformatics
usernicai/BioinfUtil
Regularly used bioinformatics script for different purposes
usernicai/bulk-HiC-analysis
bulk hic analysis code (bash & python)
usernicai/ChIP-seq-analysis
ChIP-seq analysis notes from Ming Tang
usernicai/CodeSpringLab
Collection of bioinformatics pipelines and scripts for Cold Spring Harbor Laboratory created by BSR (Bioinformatics shared resources)
usernicai/CRC
usernicai/custom_scripts
General repository with custom scripts for data processing, bioinformatic workflows and downstream analysis
usernicai/fuc
Frequently used commands in bioinformatics
usernicai/HiC
Guides for processing HiC data
usernicai/HiC-data-analysis
General analysis of HiC data, including compartment A/B, domains and loops.
usernicai/hic-pipeline
HiC uniform processing pipeline
usernicai/HiC-Pro
HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
usernicai/HiC_data
A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.
usernicai/HiC_tools
A collection of tools for Hi-C data analysis
usernicai/juicer
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
usernicai/MCF10APromoterAnalysis
Processing scripts for ChIP/RNA/HiC-Seq data from MCF10A cells and derivative cell lines
usernicai/mustache
Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation
usernicai/NGS-analysis
二代测序数据分析
usernicai/NGSpipe2go
a set of NGS pipelines
usernicai/PDX_Decitabine_3DEpigenome
usernicai/PDXHiC_supplemental
Supplemental scripts for the PDX Hi-C paper
usernicai/PPP
Repository for pipeline code
usernicai/public_scripts
collection of bioinformatic scripts
usernicai/pyGenomeTracks
python module to plot beautiful and highly customizable genome browser tracks
usernicai/RNA-seq-analysis
RNAseq analysis notes from Ming Tang
usernicai/scripts
A place to store my bioinformatics scripts
usernicai/xssh1
VPS for LINUX