utooley

bids_ppc_scripts

BIDS-compatible minimal containerized preprocessing

analysis-nda17

Collection of scripts to analyze ABCD release data

arun_fc_metrics_motion

CogTrain

Kable Lab Work

motion-FC-metrics

Code to perform QC-FC analysis on human connectome project (HCP) data with different functional connectivity (FC) measures

rsfmri_envi_networks

Code accompanying Tooley et al. (2020), Associations between Neighborhood SES & Functional Brain Development. https://doi.org/10.1093/cercor/bhz066

Tooley2023_prenatal_env_cortical_network_dev

Code accompanying Tooley et al. (2024), Prenatal environment is associated with the pace of cortical network development over the first three years of life. https://www.biorxiv.org/content/10.1101/2023.08.18.552639v1

Tooley_2022_child_functional_comms

Code accompanying Tooley, Bassett, & Mackey (2022), Functional brain network community structure in childhood: Unfinished territories and fuzzy boundaries. https://doi.org/10.1016/j.neuroimage.2021.118843

Tooley_2022_childhood_functional_network_dev

Code accompanying Tooley et al. (2022), The Age of Reason: Functional Brain Network Development during Childhood. https://www.jneurosci.org/content/42/44/8237

utooley/Tooley_2022_child_functional_comms

Code accompanying Tooley, Bassett, & Mackey (2022), Functional brain network community structure in childhood: Unfinished territories and fuzzy boundaries. https://doi.org/10.1016/j.neuroimage.2021.118843

utooley/rsfmri_envi_networks

Code accompanying Tooley et al. (2020), Associations between Neighborhood SES & Functional Brain Development. https://doi.org/10.1093/cercor/bhz066

utooley/Tooley2023_prenatal_env_cortical_network_dev

Code accompanying Tooley et al. (2024), Prenatal environment is associated with the pace of cortical network development over the first three years of life. https://www.biorxiv.org/content/10.1101/2023.08.18.552639v1

utooley/analysis-nda17

Collection of scripts to analyze ABCD release data

utooley/arun_fc_metrics_motion

utooley/CBIG

utooley/citation_bias_ext

utooley/motion-FC-metrics

Code to perform QC-FC analysis on human connectome project (HCP) data with different functional connectivity (FC) measures

utooley/Tooley_2022_childhood_functional_network_dev

Code accompanying Tooley et al. (2022), The Age of Reason: Functional Brain Network Development during Childhood. https://www.jneurosci.org/content/42/44/8237

utooley/cleanBib

Probabilistically assign gender proportions of first/last authors pairs in bibliography entries

utooley/denoiser

Nuisance removal tool for fMRI data

utooley/fmriprep

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

utooley/mriqc

Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

utooley/net_learn_adults

utooley/netlearn_kids_analysis

utooley/netlearn_task_v1

Network learning task in PsychoPy

utooley/nistats.github.io

Nistats webpage

utooley/niworkflows

Common workflows for MRI (anatomical, functional, diffusion, etc)

utooley/parse_vNav_Motion

A python script for parsing motion info in vNav DICOM series

utooley/pennbbl.github.io

Information and tutorials on how to go from DICOMS to dataframes

utooley/pinheirochagas.github.io

Website

utooley/redoc

[NOTE: Project in suspended animation for now] Reversible Reproducible Documents

utooley/repo2data-caching-s3

utooley/spatial_topography_CUBIC

utooley/specification-curves

Tutorial on Specification Curve Analysis for dev brown bag, May 2019

utooley/system_matrix_tools

utooley/Tooley2024_structure_function_neonates

Code accompanying "Structure-function coupling in the first month of life: Associations with age and attention"

utooley/utooley.github.io

utooley/within_between_network_conn_CBPD

utooley/xcpEngine

Official public repository for the XCP Engine