valentynbez

valentynbez's Stars

• rui314/mold

  Mold: A Modern Linker 🦠

  Language:C++14.4k471

• baker-laboratory/RoseTTAFold-All-Atom

  Language:Python649119

• jasonkyuyim/multiflow

  Language:Python1176

• biocypher/biochatter

  Backend library for conversational AI in biomedicine

  Language:Jupyter Notebook7023

• biotite-dev/biotite

  A comprehensive library for computational molecular biology

  Language:Python682102

• padlocbio/padloc-db

  HMMs and system models used by PADLOC

  69

• charlax/professional-programming

  A collection of learning resources for curious software engineers

  Language:Python46.8k3.7k

• DeepGraphLearning/ESM-GearNet

  ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)

  Language:Python7910

• TravisWheelerLab/drug-sniffer

  Sniffing out new drugs

  Language:HTML219

• TravisWheelerLab/nail

  Nail is an Alignment Inference tooL

  Language:Rust412

• astral-sh/uv

  An extremely fast Python package and project manager, written in Rust.

  Language:Rust27.3k786

• pubgrub-rs/pubgrub

  PubGrub version solving algorithm implemented in Rust

  Language:Rust41837

• martinez-zacharya/TRILL

  Sandbox for Deep-Learning based Computational Protein Design

  Language:Python1038

• zed-industries/zed

  Code at the speed of thought – Zed is a high-performance, multiplayer code editor from the creators of Atom and Tree-sitter.

  Language:Rust50.5k3.1k

• vosen/ZLUDA

  CUDA on non-NVIDIA GPUs

  Language:Rust9.8k639

• HuiyangYu/PanDepth

  An ultra-fast and efficient genomic tool for coverage calculation

  Language:C1374

• NVIDIA/cutlass

  CUDA Templates for Linear Algebra Subroutines

  Language:C++5.7k978

• bluenote-1577/skani

  Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.

  Language:Rust17010

• vtraag/leidenalg

  Implementation of the Leiden algorithm for various quality functions to be used with igraph in Python.

  Language:Python62178

• lh3/minimap2

  A versatile pairwise aligner for genomic and spliced nucleotide sequences

  Language:C1.8k415

• torognes/vsearch

  Versatile open-source tool for microbiome analysis

  Language:C++671125

• Malfoy/NIQKI

  Next Index to Query Kmer Intersection

  Language:C++161

• marbl/MashMap

  A fast approximate aligner for long DNA sequences

  Language:C++26939

• althonos/pyskani

  PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.

  Language:Rust241

• dnbaker/dashing2

  Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.

  Language:C++627

• dnbaker/bonsai

  Bonsai: Fast, flexible taxonomic analysis and classification

  Language:C++7011

• dnbaker/dashing

  Fast and accurate genomic distances using HyperLogLog

  Language:C++16011

• uni-halle/gerbil

  A fast and memory-efficient k-mer counter with GPU-support

  Language:C++3414

• zaeleus/noodles

  Bioinformatics I/O libraries in Rust

  Language:Rust51253

• bacpop/PopPUNK

  PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)

  Language:Python9320