viorik/ELSDc

Is my lapck 'make' wrong? I cannot make your code on Ubuntu system.

End030 opened this issue · 2 comments

End030 commented

I have some problems in process of running the code, I hope you can help me , thank you!
When I ‘make’lapack ，there are some options to pick, gfortran/pghpf/alpha ect. I chose gfortran to ‘make’. Then outputs liblapack.a/liblapacke.a/librefblas.a/libtmglib.a and lapacke.h/lapacke_config.h/lapacke_mangling.h/lapacke_mangling_with_flags.h/lapacke_utils.h. I put them into /usr/local/lib and /usr/local/include respectively. But when I ‘make’ your code , it occurs some problems as below. I don’t know which step I have made wrong. I hope you can help me , thank you !

fan@fan-ThinkStation-P300:~/EmbryonicCell/ellipse-detection/ELSDc-master$ make
make -C src
make[1]: Entering directory '/home/fan/EmbryonicCell/ellipse-detection/ELSDc-master/src'
cc -O3 -I/usr/local/lib -o elsdc main.c pgm.c svg.c elsdc.c gauss.c curve_grow.c polygon.c ring.c ellipse_fit.c rectangle.c iterator.c image.c lapack_wrapper.c misc.c -llapack -lm
//usr/local/lib/liblapack.a(dsyev.o)：In function ‘dsyev_’：
dsyev.f:(.text+0x508)： ‘dscal_’undefined reference
//usr/local/lib/liblapack.a(dsytrd.o)：In function ‘dsytrd_’：
dsytrd.f:(.text+0x386)： ‘dsyr2k_’undefined reference
dsytrd.f:(.text+0x6a7)： ‘dsyr2k_’undefined reference
//usr/local/lib/liblapack.a(dsteqr.o)：In function ‘dsteqr_’：
dsteqr.f:(.text+0xab0)： ‘dswap_’undefined reference
//usr/local/lib/liblapack.a(xerbla.o)：In function ‘xerbla_’：
xerbla.f:(.text+0x49)： ‘gfortran_st_write’undefined reference
xerbla.f:(.text+0x54)： ‘gfortran_string_len_trim’undefined reference
xerbla.f:(.text+0x69)： ‘gfortran_transfer_character_write’undefined reference
xerbla.f:(.text+0x79)： ‘gfortran_transfer_integer_write’undefined reference
xerbla.f:(.text+0x81)： ‘gfortran_st_write_done’undefined reference
xerbla.f:(.text+0x8a)： ‘gfortran_stop_string’undefined reference
//usr/local/lib/liblapack.a(dlatrd.o)：In function ‘dlatrd’：
dlatrd.f:(.text+0x125)： ‘dgemv’undefined reference
dlatrd.f:(.text+0x1a3)： ‘dgemv’undefined reference
dlatrd.f:(.text+0x29e)： ‘dsymv’undefined reference
dlatrd.f:(.text+0x326)： ‘dgemv’undefined reference
dlatrd.f:(.text+0x3a0)： ‘dgemv’undefined reference
dlatrd.f:(.text+0x425)： ‘dgemv_’undefined reference
dlatrd.f:(.text+0x4a2)： ‘dgemv_’undefined reference
dlatrd.f:(.text+0x4f0)： ‘dscal_’undefined reference
dlatrd.f:(.text+0x55d)： ‘ddot_’undefined reference
dlatrd.f:(.text+0x5c1)： ‘daxpy_’undefined reference
dlatrd.f:(.text+0x6f5)： ‘dsymv_’undefined reference
dlatrd.f:(.text+0x738)： ‘dscal_’undefined reference
dlatrd.f:(.text+0x788)： ‘ddot_’undefined reference
dlatrd.f:(.text+0x7d2)： ‘daxpy_’undefined reference
dlatrd.f:(.text+0x880)： ‘dgemv_’undefined reference
dlatrd.f:(.text+0x8f7)： ‘dgemv_’undefined reference
dlatrd.f:(.text+0x99a)： ‘dgemv_’undefined reference
dlatrd.f:(.text+0xa16)： ‘dgemv_’undefined reference
dlatrd.f:(.text+0xa9f)： ‘dgemv_’undefined reference
//usr/local/lib/liblapack.a(dlatrd.o):dlatrd.f:(.text+0xb16): Undefined reference to dgemv_
//usr/local/lib/liblapack.a(dsytd2.o)：In function ‘dsytd2_’：
dsytd2.f:(.text+0x1b3)： ‘dsymv_’undefined reference
dsytd2.f:(.text+0x1ff)： ‘ddot_’undefined reference
dsytd2.f:(.text+0x249)： ‘daxpy_’undefined reference
dsytd2.f:(.text+0x28b)： ‘dsyr2_’undefined reference
dsytd2.f:(.text+0x46d)： ‘dsymv_’undefined reference
dsytd2.f:(.text+0x4cc)： ‘ddot_’undefined reference
dsytd2.f:(.text+0x529)： ‘daxpy_’undefined reference
dsytd2.f:(.text+0x58a)： ‘dsyr2_’undefined reference
//usr/local/lib/liblapack.a(dlarfg.o)：In function ‘dlarfg_’：
dlarfg.f:(.text+0x39)： ‘dnrm2_’undefined reference
dlarfg.f:(.text+0x16f)： ‘dscal_’undefined reference
dlarfg.f:(.text+0x1fc)： ‘dscal_’undefined reference
dlarfg.f:(.text+0x24a)： ‘dnrm2_’undefined reference
//usr/local/lib/liblapack.a(dlarfb.o)：In function ‘dlarfb_’：
dlarfb.f:(.text+0x1ec)： ‘dcopy_’undefined reference
dlarfb.f:(.text+0x24e)： ‘dtrmm_’undefined reference
dlarfb.f:(.text+0x2c1)： ‘dtrmm_’undefined reference
dlarfb.f:(.text+0x331)： ‘dtrmm_’undefined reference
dlarfb.f:(.text+0x54c)： ‘dcopy_’undefined reference
dlarfb.f:(.text+0x5bb)： ‘dtrmm_’undefined reference
dlarfb.f:(.text+0x62e)： ‘dtrmm_’undefined reference
dlarfb.f:(.text+0x69e)： ‘dtrmm_’undefined reference
dlarfb.f:(.text+0x7ee)： ‘dcopy_’undefined reference
dlarfb.f:(.text+0x873)： ‘dtrmm_’undefined reference
dlarfb.f:(.text+0x8e1)： ‘dtrmm_’undefined reference
dlarfb.f:(.text+0x95a)： ‘dtrmm_’undefined reference
dlarfb.f:(.text+0xaed)： ‘dcopy_’undefined reference
dlarfb.f:(.text+0xb5b)： ‘dtrmm_’undefined reference
dlarfb.f:(.text+0xbce)： ‘dtrmm_’undefined reference
dlarfb.f:(.text+0xc3e)： ‘dtrmm_’undefined reference
dlarfb.f:(.text+0xdaf)： ‘dcopy_’undefined reference
dlarfb.f:(.text+0xe37)： ‘dtrmm_’undefined reference
dlarfb.f:(.text+0xea5)： ‘dtrmm_’undefined reference
dlarfb.f:(.text+0xf23)： ‘dtrmm_’undefined reference
dlarfb.f:(.text+0x10b5)： ‘dcopy_’undefined reference
dlarfb.f:(.text+0x1150)： ‘dtrmm_’undefined reference
dlarfb.f:(.text+0x11be)： ‘dtrmm_’undefined reference
dlarfb.f:(.text+0x1249)： ‘dtrmm_’undefined reference
dlarfb.f:(.text+0x13a7)： ‘dcopy_’undefined reference
dlarfb.f:(.text+0x143e)： ‘dtrmm_’undefined reference
dlarfb.f:(.text+0x14ac)： ‘dtrmm_’undefined reference
dlarfb.f:(.text+0x1532)： ‘dtrmm_’undefined reference
dlarfb.f:(.text+0x16a4)： ‘dcopy_’undefined reference
dlarfb.f:(.text+0x170b)： ‘dtrmm_’undefined reference
dlarfb.f:(.text+0x177e)： ‘dtrmm_’undefined reference
dlarfb.f:(.text+0x17ee)： ‘dtrmm_’undefined reference
dlarfb.f:(.text+0x18f5)： ‘dgemm_’undefined reference
dlarfb.f:(.text+0x1971)： ‘dgemm_’undefined reference
dlarfb.f:(.text+0x19ff)： ‘dgemm_’undefined reference
dlarfb.f:(.text+0x1a83)： ‘dgemm_’undefined reference
dlarfb.f:(.text+0x1b14)： ‘dgemm_’undefined reference
//usr/local/lib/liblapack.a(dlarfb.o):dlarfb.f:(.text+0x1b82): Undefined reference to dgemm_
//usr/local/lib/liblapack.a(dlarft.o)：In function ‘dlarft_’：
dlarft.f:(.text+0x4c4)： ‘dgemv_’undefined reference
dlarft.f:(.text+0x543)： ‘dtrmv_’undefined reference
dlarft.f:(.text+0x6db)： ‘dgemv_’undefined reference
dlarft.f:(.text+0x87d)： ‘dgemv_’undefined reference
dlarft.f:(.text+0x91b)： ‘dtrmv_’undefined reference
dlarft.f:(.text+0xa6a)： ‘dgemv_’undefined reference
//usr/local/lib/liblapack.a(dorg2l.o)：In function ‘dorg2l_’：
dorg2l.f:(.text+0x221)： ‘dscal_’undefined reference
//usr/local/lib/liblapack.a(dorg2r.o)：In function ‘dorg2r_’：
dorg2r.f:(.text+0x2e6)： ‘dscal_’undefined reference
//usr/local/lib/liblapack.a(dlarf.o)：In function ‘dlarf_’：
dlarf.f:(.text+0x13a)： ‘dgemv_’undefined reference
dlarf.f:(.text+0x185)： ‘dger_’undefined reference
dlarf.f:(.text+0x206)： ‘dgemv_’undefined reference
dlarf.f:(.text+0x250)： ‘dger_’undefined reference
collect2: error: ld returned 1 exit status
Makefile:28: recipe for target 'elsdc' failed
make[1]: *** [elsdc] Error 1
make[1]: Leaving directory '/home/fan/EmbryonicCell/ellipse-detection/ELSDc-master/src'
Makefile:21: recipe for target 'elsdc' failed
make: *** [elsdc] Error 2

End030 commented

Thank you for your answer. I have solved the problem. There are some libs have been left when 'make' lapack.